Mercurial > repos > iuc > ivar_consensus
view sanitize_bed.py @ 5:5e668dc9f379 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit a5ff06c631a2a5a0d5d44edd6cb58a599d50918b"
author | iuc |
---|---|
date | Wed, 19 May 2021 16:50:43 +0000 |
parents | 78bbd17d0703 |
children | e319b5b65879 |
line wrap: on
line source
#!/usr/bin/env python import sys with open(sys.argv[1]) as i: bed_data = i.readlines() sanitized_data = [] try: for record in bed_data: fields = record.split('\t') sanitized_data.append( '\t'.join(fields[:4] + ['60'] + fields[5:]) ) except IndexError: pass # leave column number issue to getmasked else: with open(sys.argv[1], 'w') as o: o.writelines(sanitized_data)