Mercurial > repos > iuc > ivar_getmasked
diff test-data/zika/Z52.tsv @ 1:ad0dc9f4c9e2 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 27fa363aa1289366fd0e888709d022357533e4de"
| author | iuc |
|---|---|
| date | Sat, 04 Apr 2020 12:34:02 -0400 |
| parents | fafb3d685fa9 |
| children |
line wrap: on
line diff
--- a/test-data/zika/Z52.tsv Mon Mar 30 06:54:03 2020 -0400 +++ b/test-data/zika/Z52.tsv Sat Apr 04 12:34:02 2020 -0400 @@ -1,11 +1,11 @@ -REGION POS REF ALT REF_DP_Z52_a.tsv REF_RV_Z52_a.tsv REF_QUAL_Z52_a.tsv ALT_DP_Z52_a.tsv ALT_RV_Z52_a.tsv ALT_QUAL_Z52_a.tsv ALT_FREQ_Z52_a.tsv TOTAL_DP_Z52_a.tsv PVAL_Z52_a.tsv PASS_Z52_a.tsv REF_DP_Z52_b.tsv REF_RV_Z52_b.tsv REF_QUAL_Z52_b.tsv ALT_DP_Z52_b.tsv ALT_RV_Z52_b.tsv ALT_QUAL_Z52_b.tsv ALT_FREQ_Z52_b.tsv TOTAL_DP_Z52_b.tsv PVAL_Z52_b.tsv PASS_Z52_b.tsv -PRV 1682 C T 1097 984 37 34 33 37 0.0300088 1133 7.79053e-10 TRUE 1505 1475 37 50 50 37 0.0321543 1555 1.59703e-14 TRUE -PRV 1965 T G 302 113 37 41 3 35 0.119534 343 2.81419e-14 TRUE 469 28 36 71 1 36 0.131481 540 1.31011e-23 TRUE -PRV 2781 T G 353 70 37 48 8 36 0.117936 407 4.05758e-16 TRUE 404 75 37 35 7 36 0.0788288 444 1.12705e-11 TRUE -PRV 2922 C T 263 0 36 11 0 36 0.040146 274 0.000431954 TRUE 277 0 36 19 0 34 0.0641892 296 1.46245e-06 TRUE -PRV 3148 Y C 0 0 0 381 75 36 0.223199 1707 0 TRUE 0 0 0 679 99 37 0.258765 2624 0 TRUE -PRV 3148 Y T 0 0 0 1324 264 36 0.77563 1707 0 TRUE 0 0 0 1943 271 36 0.740473 2624 0 TRUE -PRV 3295 A G 1002 1002 35 38 38 33 0.0365385 1040 4.30837e-11 TRUE 1806 1806 36 69 69 34 0.0368 1875 2.28815e-20 TRUE -PRV 5680 C T 27 5 44 8 2 45 0.228571 35 0.000596701 TRUE 38 5 50 7 1 49 0.155556 45 0.00133612 TRUE -PRV 7916 C T 351 289 36 81 78 37 0.1875 432 5.39655e-27 TRUE 286 227 36 45 38 37 0.135952 331 4.31473e-15 TRUE -PRV 9713 C T 374 0 37 13 0 35 0.0335917 387 0.00010474 TRUE 475 0 37 27 0 36 0.0537849 502 4.66646e-09 TRUE +REGION POS REF ALT GFF_FEATURE REF_CODON REF_AA ALT_CODON ALT_AA REF_DP_./var_0.tsv REF_RV_./var_0.tsv REF_QUAL_./var_0.tsv ALT_DP_./var_0.tsv ALT_RV_./var_0.tsv ALT_QUAL_./var_0.tsv ALT_FREQ_./var_0.tsv TOTAL_DP_./var_0.tsv PVAL_./var_0.tsv PASS_./var_0.tsv REF_DP_./var_1.tsv REF_RV_./var_1.tsv REF_QUAL_./var_1.tsv ALT_DP_./var_1.tsv ALT_RV_./var_1.tsv ALT_QUAL_./var_1.tsv ALT_FREQ_./var_1.tsv TOTAL_DP_./var_1.tsv PVAL_./var_1.tsv PASS_./var_1.tsv +PRV 1682 C T 1505 1475 37 50 50 37 0.0321543 1555 1.59703e-14 TRUE 1097 984 37 34 33 37 0.0300088 1133 7.79053e-10 TRUE +PRV 1965 T G 469 28 36 71 1 36 0.131481 540 1.31011e-23 TRUE 302 113 37 41 3 35 0.119534 343 2.81419e-14 TRUE +PRV 2781 T G 404 75 37 35 7 36 0.0788288 444 1.12705e-11 TRUE 353 70 37 48 8 36 0.117936 407 4.05758e-16 TRUE +PRV 2922 C T 277 0 36 19 0 34 0.0641892 296 1.46245e-06 TRUE 263 0 36 11 0 36 0.040146 274 0.000431954 TRUE +PRV 3148 Y C 0 0 0 679 99 37 0.258765 2624 0 TRUE 0 0 0 381 75 36 0.223199 1707 0 TRUE +PRV 3148 Y T 0 0 0 1943 271 36 0.740473 2624 0 TRUE 0 0 0 1324 264 36 0.77563 1707 0 TRUE +PRV 3295 A G 1806 1806 36 69 69 34 0.0368 1875 2.28815e-20 TRUE 1002 1002 35 38 38 33 0.0365385 1040 4.30837e-11 TRUE +PRV 5680 C T 38 5 50 7 1 49 0.155556 45 0.00133612 TRUE 27 5 44 8 2 45 0.228571 35 0.000596701 TRUE +PRV 7916 C T 286 227 36 45 38 37 0.135952 331 4.31473e-15 TRUE 351 289 36 81 78 37 0.1875 432 5.39655e-27 TRUE +PRV 9713 C T 475 0 37 27 0 36 0.0537849 502 4.66646e-09 TRUE 374 0 37 13 0 35 0.0335917 387 0.00010474 TRUE