Mercurial > repos > iuc > ivar_removereads

diff ivar_removereads.xml @ 10:ee29337f905c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 8ce6fd9aee543d9e62db33a9c95f79d8dc4e6dea
author iuc
date Wed, 13 Jul 2022 15:20:33 +0000
parents 8d36959b000d
children 7f1cfa4c0e32
line wrap: on
line diff
--- a/ivar_removereads.xml	Fri Aug 20 20:34:11 2021 +0000
+++ b/ivar_removereads.xml	Wed Jul 13 15:20:33 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="ivar_removereads" name="ivar removereads" version="@VERSION@+galaxy2">
+<tool id="ivar_removereads" name="ivar removereads" version="@VERSION@+galaxy3" profile="21.01">
     <description>Remove reads from trimmed BAM file</description>
     <macros>
         <import>macros.xml</import>
@@ -22,7 +22,7 @@
         ln -s '$input_bam' sorted.bam &&
         ln -s '${input_bam.metadata.bam_index}' sorted.bam.bai &&
 
-        ivar removereads 
+        ivar removereads
         -i sorted.bam
         -b binding_sites.bed
         -p removed_reads.bam
@@ -109,7 +109,7 @@
    Preprocessing of the BAM input with ivar trim is essential for this tool to
    work because only ``ivar trim`` can add required primer information to the
    BAM auxillary data of every read.
-        
+
 ivar documentation can be found at `<https://andersen-lab.github.io/ivar/html/manualpage.html>`__.
     ]]></help>
     <expand macro="citations" />