Mercurial > repos > iuc > ivar_variants

comparison ivar_variants.xml @ 18:41c7ba073a9b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit b548a504e88bd330f534be0dd018175c9341b1f1
author iuc
date Mon, 10 Feb 2025 15:12:35 +0000
parents 045d6d00f606
children
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17:abbc8041e8ec 18:41c7ba073a9b
1 <tool id="ivar_variants" name="ivar variants" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> 1 <tool id="ivar_variants" name="ivar variants" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
2 <description>Call variants from aligned BAM file</description> 2 <description>Call variants from aligned BAM file</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="xrefs"/>
6 <expand macro="requirements"/> 7 <expand macro="requirements"/>
7 <expand macro="version_command"/> 8 <expand macro="version_command"/>
8 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
9 ln -s '$ref' ref.fa && 10 ln -s '$ref' ref.fa &&
10 ln -s '$input_bam' sorted.bam && 11 ln -s '$input_bam' sorted.bam &&