Mercurial > repos > iuc > ivar_variants

diff ivar_variants.xml @ 15:045d6d00f606 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 9d25797b06335056930bddede98a2f3f9a303470
author iuc
date Tue, 27 Jun 2023 17:13:41 +0000
parents ed28dd32141c
children
line wrap: on
line diff
--- a/ivar_variants.xml	Wed Apr 19 08:32:37 2023 +0000
+++ b/ivar_variants.xml	Tue Jun 27 17:13:41 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="ivar_variants" name="ivar variants" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
+<tool id="ivar_variants" name="ivar variants" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
     <description>Call variants from aligned BAM file</description>
     <macros>
         <import>macros.xml</import>
@@ -59,12 +59,12 @@
         </data>
     </outputs>
     <tests>
-        <test expect_num_outputs="1">
+        <test expect_num_outputs="1"> <!-- test 1 -->
             <param name="input_bam" value="zika/Z52_a.masked.sorted.bam"/>
             <param name="ref" value="zika/db/PRV.fa"/>
             <output name="output_variants_tabular" file="zika/Z52_a.tsv" ftype="tabular"/>
         </test>
-        <test expect_num_outputs="1">
+        <test expect_num_outputs="1"> <!-- test 2 -->
             <param name="input_bam" value="zika/Z52_a.masked.sorted.bam"/>
             <param name="ref" value="zika/db/PRV.fa"/>
             <conditional name="output_format">
@@ -72,7 +72,7 @@
             </conditional>
             <output name="output_variants_vcf" file="zika/Z52_a.vcf" ftype="vcf"/>
         </test>
-        <test expect_num_outputs="2">
+        <test expect_num_outputs="2"> <!-- test 3 -->
             <param name="input_bam" value="zika/Z52_a.masked.sorted.bam"/>
             <param name="ref" value="zika/db/PRV.fa"/>
             <conditional name="output_format">
@@ -82,13 +82,13 @@
             <output name="output_variants_tabular" file="zika/Z52_a.tsv" ftype="tabular" lines_diff="6"/>
             <output name="output_variants_vcf" file="zika/Z52_a_pass.vcf" ftype="vcf"/>
         </test>
-        <test expect_num_outputs="1">
+        <test expect_num_outputs="1"> <!-- test 4 -->
             <param name="input_bam" value="zika/Z52_a.masked.sorted.bam"/>
             <param name="ref" value="zika/db/PRV.fa"/>
             <param name="gtf" value="zika/db/PRV.gff"/>
             <output name="output_variants_tabular" file="zika/Z52_a_annotated.tsv" ftype="tabular"/>
         </test>
-        <test expect_num_outputs="2">
+        <test expect_num_outputs="2"> <!-- test 5 -->
             <param name="input_bam" value="zika/Z52_a.masked.sorted.bam"/>
             <param name="ref" value="zika/db/PRV.fa"/>
             <param name="gtf" value="zika/db/PRV.gff"/>