Mercurial > repos > iuc > ivar_variants

diff test-data/zika/Z52_a_annotated.tsv @ 11:38b91a3190cd draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit a14db40361bcb2ee608bccd9222e1654aaea3324
author iuc
date Wed, 11 Jan 2023 09:53:09 +0000
parents
children ed28dd32141c
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/zika/Z52_a_annotated.tsv	Wed Jan 11 09:53:09 2023 +0000
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+REGION	POS	REF	ALT	REF_DP	REF_RV	REF_QUAL	ALT_DP	ALT_RV	ALT_QUAL	ALT_FREQ	TOTAL_DP	PVAL	PASS	GFF_FEATURE	REF_CODON	REF_AA	ALT_CODON	ALT_AA
+PRV	350	A	T	101	101	36	5	5	35	0.0471698	106	0.0304989	FALSE	cds-YP_002790881.1	AAA	K	TAA	*
+PRV	722	C	+A	280	234	36	9	0	20	0.0319149	282	0.0349042	FALSE	NA	NA	NA	NA	NA
+PRV	1682	C	T	1097	984	37	34	33	37	0.0300088	1133	7.79053e-10	TRUE	cds-YP_002790881.1	CTG	L	TTG	L
+PRV	1965	T	G	302	113	37	63	25	37	0.172603	365	4.41891e-21	TRUE	cds-YP_002790881.1	GTT	V	GGT	G
+PRV	2702	A	G	31	31	36	1	1	23	0.03125	32	0.507937	FALSE	cds-YP_002790881.1	AGA	R	GGA	G
+PRV	2781	T	G	354	70	37	48	8	36	0.117647	408	4.33605e-16	TRUE	cds-YP_002790881.1	GTG	V	GGG	G
+PRV	2922	C	T	264	0	36	11	0	36	0.04	275	0.000440953	TRUE	cds-YP_002790881.1	ACT	T	ATT	I
+PRV	3148	Y	T	0	0	0	1324	264	36	0.77563	1707	0	TRUE	cds-YP_002790881.1	GAY	X	GAT	D
+PRV	3148	Y	C	0	0	0	381	75	36	0.223199	1707	0	TRUE	cds-YP_002790881.1	GAY	X	GAC	D
+PRV	3295	A	G	1002	1002	35	38	38	33	0.0365385	1040	4.30837e-11	TRUE	cds-YP_002790881.1	GCA	A	GCG	A
+PRV	5680	C	T	27	10	44	8	3	46	0.228571	35	0.000596701	TRUE	cds-YP_002790881.1	TTC	F	TTT	F
+PRV	5723	T	G	31	31	35	1	1	21	0.03125	32	0.507937	FALSE	cds-YP_002790881.1	TGA	*	GGA	G
+PRV	6201	A	G	10	0	35	2	0	38	0.166667	12	0.26087	FALSE	cds-YP_002790881.1	GAA	E	GGA	G
+PRV	6211	T	C	8	0	36	1	0	35	0.111111	9	0.5	FALSE	cds-YP_002790881.1	TGT	C	TGC	C
+PRV	7916	C	T	351	289	36	81	78	37	0.1875	432	5.39655e-27	TRUE	cds-YP_002790881.1	CAG	Q	TAG	*
+PRV	9713	C	T	374	0	37	13	0	35	0.0335917	387	0.00010474	TRUE	cds-YP_002790881.1	CTT	L	TTT	F