Mercurial > repos > iuc > iwtomics_testandplot

changeset 1:926cdd3158ae draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/iwtomics commit 11ee7ac206d41894c0b6a11f2439aaea490824f0
author iuc
date Thu, 09 Nov 2017 13:59:00 -0500
parents 800c7e974e3b
children 94965e369be4
files macros.xml testandplot.xml
diffstat 2 files changed, 22 insertions(+), 18 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Fri Aug 04 17:51:00 2017 -0400
+++ b/macros.xml	Thu Nov 09 13:59:00 2017 -0500
@@ -64,20 +64,20 @@
         <conditional name="conditionalplottype">
             <!-- plot type -->
             <param name="plottype" type="select" label="Plot type">
-            <option value="boxplot">Pointwise quantile curves (boxplot)</option>
-            <option value="curves">Curves (aligned)</option>
+                <option value="boxplot">Pointwise quantile curves (boxplot)</option>
+                <option value="curves">Curves (aligned)</option>
             </param>
-            <!-- conditional choice: plottype=boxplot -->
             <when value="boxplot">
-            <section name="probabilitiessection" title="Probabilities" expanded="True" help="Probabilities corresponding to the quantile curves to be drawn.">
-                <param name="prob0" size="3" type="float" value="0.25" min="0.0" max="1.0" label="Probability" />
-                <param name="prob1" size="3" type="float" value="0.5" min="0.0" max="1.0" label="Probability" />
-                <param name="prob2" size="3" type="float" value="0.75" min="0.0" max="1.0" label="Probability" />
-                <repeat name="probabilities" title="Probabilities">
-                <param name="prob" size="3" type="float" value="0.5" min="0.0" max="1.0" label="Probability" />
-                </repeat>
-            </section>
+                <section name="probabilitiessection" title="Probabilities" expanded="True" help="Probabilities corresponding to the quantile curves to be drawn.">
+                    <param name="prob0" size="3" type="float" value="0.25" min="0.0" max="1.0" label="Probability" />
+                    <param name="prob1" size="3" type="float" value="0.5" min="0.0" max="1.0" label="Probability" />
+                    <param name="prob2" size="3" type="float" value="0.75" min="0.0" max="1.0" label="Probability" />
+                    <repeat name="probabilities" title="Probabilities">
+                        <param name="prob" size="3" type="float" value="0.5" min="0.0" max="1.0" label="Probability" />
+                    </repeat>
+                </section>
             </when>
+            <when value="curves" />
         </conditional>
     </xml>
 
@@ -87,17 +87,18 @@
             <conditional name="conditionalgroupby">
                 <!-- group by -->
                 <param name="groupby" type="select" label="Group by" help="How tests should be grouped.">
-                <option value="none">No plot</option>
-                <option value="test">Group by test</option>
-                <option value="feature">Group by feature</option>
+                    <option value="none">No plot</option>
+                    <option value="test">Group by test</option>
+                    <option value="feature">Group by feature</option>
                 </param>
+                <when value="none" />
                 <when value="test">
-                <param name="testalphaplot" size="3" type="float" value="0.05" min="0.0" max="1.0" label="Level of the test (alpha)" />
-                <param name="testonlysig" type="boolean" truevalue="TRUE" falsevalue="FALSE" label="Plot only significant tests" />
+                    <param name="testalphaplot" size="3" type="float" value="0.05" min="0.0" max="1.0" label="Level of the test (alpha)" />
+                    <param name="testonlysig" type="boolean" truevalue="TRUE" falsevalue="FALSE" label="Plot only significant tests" />
                 </when>
                 <when value="feature">
-                <param name="featurealphaplot" size="3" type="float" value="0.05" min="0.0" max="1.0" label="Level of the test (alpha)" />
-                <param name="featureonlysig" type="boolean" truevalue="TRUE" falsevalue="FALSE" label="Plot only significant tests" />
+                    <param name="featurealphaplot" size="3" type="float" value="0.05" min="0.0" max="1.0" label="Level of the test (alpha)" />
+                    <param name="featureonlysig" type="boolean" truevalue="TRUE" falsevalue="FALSE" label="Plot only significant tests" />
                 </when>
             </conditional>
         </section>
--- a/testandplot.xml	Fri Aug 04 17:51:00 2017 -0400
+++ b/testandplot.xml	Thu Nov 09 13:59:00 2017 -0500
@@ -80,6 +80,9 @@
         <option value="quantile">Quantile difference(s)</option>
       </param>
       <!-- conditional choice: statistics=quantile -->
+      <when value="mean" />
+      <when value="median" />
+      <when value="variance" />
       <when value="quantile">
         <section name="quantilesection" title="Probabilities" expanded="True" help="Probabilities corresponding to the quantiles in test statistics.">
           <repeat name="qprobabilities" title="Probabilities" min="1">