diff test-data/d.vcf @ 0:630e2929a131 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/jasminesv/ commit eb5baa10589b31c422ec8b8980617a3f375608ad"
author iuc
date Wed, 20 Jan 2021 19:49:40 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/d.vcf	Wed Jan 20 19:49:40 2021 +0000
@@ -0,0 +1,15 @@
+##fileformat=VCFv4.1
+##contig=<ID=1,length=400>
+##contig=<ID=2,length=400>
+##INFO=<ID=CHR2,Number=1,Type=String,Description="Chromosome for END coordinate in case of a translocation">
+##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the structural variant">
+##INFO=<ID=RE,Number=1,Type=Integer,Description="read support">
+##INFO=<ID=PRECISE,Number=0,Type=Flag,Description="Precise structural variation">
+##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Length of the SV">
+##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
+##INFO=<ID=STRANDS,Number=A,Type=String,Description="Strand orientation of the adjacency in BEDPE format (DEL:+-, DUP:-+, INV:++/--)">
+##INFO=<ID=IS_SPECIFIC,Number=1,Type=String,Description="Whether or not a variant has enough read support and length to be specific">
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
+chr1	100	1	CACGTACGTACGTACGTACGTACGTACTGACGT	C	.	PASS	PRECISE;CHR2=1;END=132;SVTYPE=DEL;SUPTYPE=AL;SVLEN=-32;STRANDS=+-;RE=12;IS_SPECIFIC=1	GT	1/1
+chr1	205	2	C	CACGTACGTACGTACGTACGTACGTACTGACGTACGTACGT	.	PASS	PRECISE;CHR2=1;END=205;SVTYPE=INS;SUPTYPE=AL;SVLEN=40;STRANDS=+-;RE=10;IS_SPECIFIC=1	GT	1/1
+chr1	300	3	N	]2:1000000]N	.	PASS	PRECISE;CHR2=2;END=3000000;SVTYPE=BND;SUPTYPE=AL;SVLEN=1;STRANDS=-+;RE=15;IS_SPECIFIC=1	GT	1/1