Mercurial > repos > iuc > jasminesv
diff test-data/d.vcf @ 0:630e2929a131 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/jasminesv/ commit eb5baa10589b31c422ec8b8980617a3f375608ad"
| author | iuc |
|---|---|
| date | Wed, 20 Jan 2021 19:49:40 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/d.vcf Wed Jan 20 19:49:40 2021 +0000 @@ -0,0 +1,15 @@ +##fileformat=VCFv4.1 +##contig=<ID=1,length=400> +##contig=<ID=2,length=400> +##INFO=<ID=CHR2,Number=1,Type=String,Description="Chromosome for END coordinate in case of a translocation"> +##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the structural variant"> +##INFO=<ID=RE,Number=1,Type=Integer,Description="read support"> +##INFO=<ID=PRECISE,Number=0,Type=Flag,Description="Precise structural variation"> +##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Length of the SV"> +##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant"> +##INFO=<ID=STRANDS,Number=A,Type=String,Description="Strand orientation of the adjacency in BEDPE format (DEL:+-, DUP:-+, INV:++/--)"> +##INFO=<ID=IS_SPECIFIC,Number=1,Type=String,Description="Whether or not a variant has enough read support and length to be specific"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +chr1 100 1 CACGTACGTACGTACGTACGTACGTACTGACGT C . PASS PRECISE;CHR2=1;END=132;SVTYPE=DEL;SUPTYPE=AL;SVLEN=-32;STRANDS=+-;RE=12;IS_SPECIFIC=1 GT 1/1 +chr1 205 2 C CACGTACGTACGTACGTACGTACGTACTGACGTACGTACGT . PASS PRECISE;CHR2=1;END=205;SVTYPE=INS;SUPTYPE=AL;SVLEN=40;STRANDS=+-;RE=10;IS_SPECIFIC=1 GT 1/1 +chr1 300 3 N ]2:1000000]N . PASS PRECISE;CHR2=2;END=3000000;SVTYPE=BND;SUPTYPE=AL;SVLEN=1;STRANDS=-+;RE=15;IS_SPECIFIC=1 GT 1/1