Mercurial > repos > iuc > jasminesv
view test-data/d.vcf @ 1:2b62154e39c8 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/jasminesv/ commit 600a9e3c1d884e5cf106e4477c7b8223ef105cdb"
| author | iuc |
|---|---|
| date | Thu, 29 Apr 2021 12:24:00 +0000 |
| parents | 630e2929a131 |
| children |
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##fileformat=VCFv4.1 ##contig=<ID=1,length=400> ##contig=<ID=2,length=400> ##INFO=<ID=CHR2,Number=1,Type=String,Description="Chromosome for END coordinate in case of a translocation"> ##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the structural variant"> ##INFO=<ID=RE,Number=1,Type=Integer,Description="read support"> ##INFO=<ID=PRECISE,Number=0,Type=Flag,Description="Precise structural variation"> ##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Length of the SV"> ##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant"> ##INFO=<ID=STRANDS,Number=A,Type=String,Description="Strand orientation of the adjacency in BEDPE format (DEL:+-, DUP:-+, INV:++/--)"> ##INFO=<ID=IS_SPECIFIC,Number=1,Type=String,Description="Whether or not a variant has enough read support and length to be specific"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> chr1 100 1 CACGTACGTACGTACGTACGTACGTACTGACGT C . PASS PRECISE;CHR2=1;END=132;SVTYPE=DEL;SUPTYPE=AL;SVLEN=-32;STRANDS=+-;RE=12;IS_SPECIFIC=1 GT 1/1 chr1 205 2 C CACGTACGTACGTACGTACGTACGTACTGACGTACGTACGT . PASS PRECISE;CHR2=1;END=205;SVTYPE=INS;SUPTYPE=AL;SVLEN=40;STRANDS=+-;RE=10;IS_SPECIFIC=1 GT 1/1 chr1 300 3 N ]2:1000000]N . PASS PRECISE;CHR2=2;END=3000000;SVTYPE=BND;SUPTYPE=AL;SVLEN=1;STRANDS=-+;RE=15;IS_SPECIFIC=1 GT 1/1