Mercurial > repos > iuc > jasminesv
view test-data/c.vcf @ 0:630e2929a131 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/jasminesv/ commit eb5baa10589b31c422ec8b8980617a3f375608ad"
| author | iuc |
|---|---|
| date | Wed, 20 Jan 2021 19:49:40 +0000 |
| parents | |
| children |
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##fileformat=VCFv4.1 ##contig=<ID=1,length=400> ##contig=<ID=2,length=400> ##INFO=<ID=CHR2,Number=1,Type=String,Description="Chromosome for END coordinate in case of a translocation"> ##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the structural variant"> ##INFO=<ID=RE,Number=1,Type=Integer,Description="read support"> ##INFO=<ID=PRECISE,Number=0,Type=Flag,Description="Precise structural variation"> ##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Length of the SV"> ##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant"> ##INFO=<ID=STRANDS,Number=A,Type=String,Description="Strand orientation of the adjacency in BEDPE format (DEL:+-, DUP:-+, INV:++/--)"> ##INFO=<ID=IS_SPECIFIC,Number=1,Type=String,Description="Whether or not a variant has enough read support and length to be specific"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> chr1 100 1 CACGTACGTACGTACGTACGTACGTACTGACGTACGT C . PASS PRECISE;CHR2=1;END=136;SVTYPE=DEL;SUPTYPE=AL;SVLEN=-36;STRANDS=+-;RE=12;IS_SPECIFIC=1 GT 1/1 chr1 200 2 C CACGTACGTACGTACGTACGTACGTACTGACGTACGT . PASS PRECISE;CHR2=1;END=200;SVTYPE=INS;SUPTYPE=AL;SVLEN=36;STRANDS=+-;RE=10;IS_SPECIFIC=1 GT 1/1 chr1 300 3 N ]2:1000000]N . PASS PRECISE;CHR2=2;END=3000000;SVTYPE=BND;SUPTYPE=AL;SVLEN=1;STRANDS=-+;RE=15;IS_SPECIFIC=1 GT 1/1