Mercurial > repos > iuc > jbrowse

annotate test-data/track_config/test.xml @ 29:112eb40ba6cf draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit d51ab68aa8a806f7d5a3ebc00638a2486a98a214
author iuc
date Fri, 05 Apr 2019 07:53:24 -0400
parents 1cfc579079a6
children 2bb2e07a7a21
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1a6d882d340d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit ac44b067ee08de23180e8b5030374cf362ac4524
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1 <?xml version="1.0"?>
1a6d882d340d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit ac44b067ee08de23180e8b5030374cf362ac4524
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2 <root>
1a6d882d340d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit ac44b067ee08de23180e8b5030374cf362ac4524
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3 <metadata>
1a6d882d340d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit ac44b067ee08de23180e8b5030374cf362ac4524
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4 <gencode>11</gencode>
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5 <genomes>
25
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6 <genome path="/tmp/tmpWtvfKr/files/000/dataset_17.dat">
1cfc579079a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit b6f9a87b6091cc881a49e0b6acfadc5e7786967f
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7 <metadata>
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8 <dataset id="27ee89e2e3d631e0" hid="1"
1cfc579079a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit b6f9a87b6091cc881a49e0b6acfadc5e7786967f
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9 size="171.6 KB"
1cfc579079a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit b6f9a87b6091cc881a49e0b6acfadc5e7786967f
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10 edam_format="format_1929"
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11 file_ext="fasta" />
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12 <history id="7b55dbb89df8f4e5"
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13 user_email="test@bx.psu.edu"
1cfc579079a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit b6f9a87b6091cc881a49e0b6acfadc5e7786967f
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14 user_id="2"
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15 display_name="test_history"/>
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16 <metadata
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17 dbkey="?"
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18 data_lines="2881"
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19 sequences="1"
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20 />
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21 <tool
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22 tool_id="upload1"
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23 tool_version="1.1.6"
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24 />
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25 </metadata>
1cfc579079a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit b6f9a87b6091cc881a49e0b6acfadc5e7786967f
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26 </genome>
10
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27 </genomes>
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28 <general>
1a6d882d340d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit ac44b067ee08de23180e8b5030374cf362ac4524
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29 <defaultLocation></defaultLocation>
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30 <trackPadding>20</trackPadding>
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31
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32 <shareLink>true</shareLink>
1a6d882d340d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit ac44b067ee08de23180e8b5030374cf362ac4524
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33 <aboutDescription></aboutDescription>
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34 <show_tracklist>true</show_tracklist>
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35 <show_nav>true</show_nav>
1a6d882d340d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit ac44b067ee08de23180e8b5030374cf362ac4524
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36 <show_overview>true</show_overview>
1a6d882d340d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit ac44b067ee08de23180e8b5030374cf362ac4524
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37 <show_menu>true</show_menu>
1a6d882d340d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit ac44b067ee08de23180e8b5030374cf362ac4524
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38 <hideGenomeOptions>false</hideGenomeOptions>
1a6d882d340d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit ac44b067ee08de23180e8b5030374cf362ac4524
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39 </general>
25
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40 <galaxyUrl>http://localhost</galaxyUrl>
10
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41 </metadata>
1a6d882d340d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit ac44b067ee08de23180e8b5030374cf362ac4524
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42 <tracks>
1a6d882d340d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit ac44b067ee08de23180e8b5030374cf362ac4524
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43 <track cat="With canvas config" format="gene_calls" visibility="default_off">
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44 <files>
25
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45 <trackFile path="/tmp/tmpWtvfKr/files/000/dataset_18.dat" ext="gff3" label="1.gff">
17
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46 <metadata>
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47 <dataset id="61f03d5eef6f1538" hid="2"
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48 size="2.3 KB"
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49 edam_format="format_1975"
ff11d442feed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
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50 file_ext="gff3" />
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51 <history id="7b55dbb89df8f4e5"
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52 user_email="test@bx.psu.edu"
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53 user_id="2"
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54 display_name="test_history"/>
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55 <metadata
25
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56 dbkey="?"
17
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57 data_lines="27"
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58 comment_lines="19"
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59 columns="9"
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60 column_names=""
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61 delimiter="__tc__"
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62 attributes="6"
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63 />
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64 <tool
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65 tool_id="upload1"
25
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66 tool_version="1.1.6"
17
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67 />
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68 </metadata>
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69 </trackFile>
10
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70 </files>
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72 <options>
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73 <style>
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74 <overridePlugins>False</overridePlugins>
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75 <overrideDraggable>False</overrideDraggable>
10
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76 <className>feature</className>
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77 <description>note,description</description>
17
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78 <label>product,name,id</label>
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79 <height>10px</height>
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80 <maxHeight>600</maxHeight>
10
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81 </style>
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82 <scaling>
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83 <method>ignore</method>
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84 <scheme>
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85 <color>__auto__</color>
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86 </scheme>
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87 </scaling>
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88 <menus>
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89 </menus>
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91 <gff>
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92 <trackType>JBrowse/View/Track/CanvasFeatures</trackType>
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93 <index>false</index>
1a6d882d340d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit ac44b067ee08de23180e8b5030374cf362ac4524
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94 </gff>
1a6d882d340d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit ac44b067ee08de23180e8b5030374cf362ac4524
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95 </options>
1a6d882d340d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit ac44b067ee08de23180e8b5030374cf362ac4524
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96 </track>
1a6d882d340d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit ac44b067ee08de23180e8b5030374cf362ac4524
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97 </tracks>
17
ff11d442feed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
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98 <plugins
ff11d442feed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
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99 ComboTrackSelector=""
ff11d442feed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
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100 Bookmarks=""
ff11d442feed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
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101 GCContent=""
ff11d442feed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
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102 theme=""
ff11d442feed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
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103 />
25
1cfc579079a6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit b6f9a87b6091cc881a49e0b6acfadc5e7786967f
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104 </root>