Mercurial > repos > iuc > jbrowse
annotate test-data/blastxml/test.xml @ 35:3235aeb45c22 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 22ed9cb1e65cff5239df7ad4c76eaf0e981cf279"
author | iuc |
---|---|
date | Wed, 18 Dec 2019 10:46:52 -0500 |
parents | ff11d442feed |
children |
rev | line source |
---|---|
3 | 1 <?xml version="1.0"?> |
2 <root> | |
3 <metadata> | |
4 <gencode>11</gencode> | |
5 <genomes> | |
6 <genome>test-data/merlin.fa</genome> | |
7 </genomes> | |
17
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
8 <general> |
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
9 <defaultLocation></defaultLocation> |
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
10 <trackPadding>40</trackPadding> |
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
11 <shareLink>true</shareLink> |
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
12 <aboutDescription></aboutDescription> |
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
13 <show_tracklist>true</show_tracklist> |
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
14 <show_nav>true</show_nav> |
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
15 <show_overview>false</show_overview> |
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
16 <show_menu>true</show_menu> |
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
17 <hideGenomeOptions>false</hideGenomeOptions> |
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
18 </general> |
3 | 19 </metadata> |
20 <tracks> | |
21 <track cat="Blah" format="blast"> | |
22 <files> | |
23 <trackFile path="test-data/blastxml/blast.xml" ext="blastxml" label="BlastP"/> | |
24 </files> | |
25 | |
26 <options> | |
27 <style> | |
28 <className>feature</className> | |
29 <description></description> | |
30 <label>Description</label> | |
31 <height>400px</height> | |
32 </style> | |
33 <blast> | |
34 <parent>test-data/blastxml/merlin.gff</parent> | |
35 <protein>true</protein> | |
36 <min_gap>10</min_gap> | |
37 </blast> | |
38 <scaling> | |
39 <method>score</method> | |
40 <algo>blast</algo> | |
41 <scales> | |
42 <type>__auto__</type> | |
43 </scales> | |
44 <scheme> | |
45 <type>opacity</type> | |
46 <color>__auto__</color> | |
47 </scheme> | |
48 </scaling> | |
49 </options> | |
50 </track> | |
51 <track cat="Blah" format="blast"> | |
52 <files> | |
53 <trackFile path="test-data/blastxml/blast.xml" ext="blastxml" label="BlastP, min_gap=3"/> | |
54 </files> | |
55 | |
56 <options> | |
57 <style> | |
58 <className>feature</className> | |
59 <description></description> | |
60 <label>Description</label> | |
61 <height>400px</height> | |
62 </style> | |
63 <blast> | |
64 <parent>test-data/blastxml/merlin.gff</parent> | |
65 <protein>true</protein> | |
66 <min_gap>3</min_gap> | |
67 </blast> | |
68 <scaling> | |
69 <method>score</method> | |
70 <algo>blast</algo> | |
71 <scales> | |
72 <type>__auto__</type> | |
73 </scales> | |
74 <scheme> | |
75 <type>opacity</type> | |
76 <color>__auto__</color> | |
77 </scheme> | |
78 </scaling> | |
79 </options> | |
80 </track> | |
81 | |
82 <track cat="Blah" format="blast"> | |
83 <files> | |
84 <trackFile path="test-data/blastxml/blast-gene1.xml" ext="blastxml" label="Non protein match/matchpart"/> | |
85 </files> | |
86 | |
87 <options> | |
88 <style> | |
89 <className>feature</className> | |
90 <description></description> | |
91 <label>Description</label> | |
92 <height>400px</height> | |
93 </style> | |
94 <blast> | |
95 <parent>test-data/blastxml/merlin.gff</parent> | |
96 <min_gap>3</min_gap> | |
97 </blast> | |
98 <scaling> | |
99 <method>ignore</method> | |
100 <algo>linear</algo> | |
101 <scheme> | |
102 <type>opacity</type> | |
103 <color>__auto__</color> | |
104 </scheme> | |
105 </scaling> | |
106 </options> | |
107 </track> | |
108 | |
109 <track cat="Blah" format="blast"> | |
110 <files> | |
111 <trackFile path="test-data/blastxml/blastn-gene1.xml" ext="blastxml" label="Non protein match/matchpart, no parent"/> | |
112 </files> | |
113 | |
114 <options> | |
115 <style> | |
116 <className>feature</className> | |
117 <description></description> | |
118 <label>Description</label> | |
119 <height>400px</height> | |
120 </style> | |
121 <blast> | |
122 <min_gap>40</min_gap> | |
123 </blast> | |
124 <scaling> | |
125 <method>score</method> | |
126 <algo>blast</algo> | |
127 <scales> | |
128 <type>__auto__</type> | |
129 </scales> | |
130 <scheme> | |
131 <type>opacity</type> | |
132 <color>__auto__</color> | |
133 </scheme> | |
134 </scaling> | |
135 </options> | |
136 </track> | |
137 | |
138 </tracks> | |
139 </root> |