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1 <?xml version="1.0"?>
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2 <root>
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3 <metadata>
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4 <gencode>11</gencode>
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5 <genomes>
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6 <genome>test-data/merlin.fa</genome>
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7 </genomes>
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8 </metadata>
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9 <tracks>
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10 <track cat="Scaling" format="wiggle">
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11 <files>
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12 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Auto Global"/>
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13 </files>
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14
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15 <options>
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16 <wiggle>
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17 <type>JBrowse/View/Track/Wiggle/XYPlot</type>
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18 <variance_band>true</variance_band>
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19 <autoscale>global</autoscale>
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20 <color_pos>__auto__</color_pos>
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21 <color_neg>__auto__</color_neg>
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22 <bicolor_pivot>zero</bicolor_pivot>
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23 </wiggle>
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24 </options>
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25 </track>
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26 <track cat="Scaling" format="wiggle">
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27 <files>
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28 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Auto Local"/>
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29 </files>
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30
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31 <options>
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32 <wiggle>
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33 <type>JBrowse/View/Track/Wiggle/XYPlot</type>
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34 <variance_band>true</variance_band>
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35 <autoscale>local</autoscale>
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36 <color_pos>__auto__</color_pos>
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37 <color_neg>__auto__</color_neg>
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38 <bicolor_pivot>zero</bicolor_pivot>
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39 </wiggle>
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40 </options>
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41 </track>
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42 <track cat="Scaling" format="wiggle">
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43 <files>
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44 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Manual"/>
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45 </files>
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46
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47 <options>
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48 <wiggle>
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49 <type>JBrowse/View/Track/Wiggle/XYPlot</type>
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50 <variance_band>false</variance_band>
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51 <autoscale>fixed</autoscale>
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52 <min>20</min>
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53 <max>60</max>
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54 <color_pos>__auto__</color_pos>
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55 <color_neg>__auto__</color_neg>
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56 <bicolor_pivot>zero</bicolor_pivot>
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57 </wiggle>
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58 </options>
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59 </track>
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60
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61
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62 <track cat="Colouring" format="wiggle">
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63 <files>
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64 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Auto A"/>
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65 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Auto B"/>
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66 </files>
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67
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68 <options>
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69 <wiggle>
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70 <type>JBrowse/View/Track/Wiggle/XYPlot</type>
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71 <variance_band>false</variance_band>
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72 <autoscale>local</autoscale>
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73
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74 <color_pos>__auto__</color_pos>
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75 <color_neg>__auto__</color_neg>
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76 <bicolor_pivot>mean</bicolor_pivot>
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77 </wiggle>
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78 </options>
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79 </track>
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80 <track cat="Colouring" format="wiggle">
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81 <files>
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82 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Manual"/>
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83 </files>
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84
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85 <options>
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86 <wiggle>
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87 <type>JBrowse/View/Track/Wiggle/XYPlot</type>
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88 <variance_band>false</variance_band>
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89 <autoscale>local</autoscale>
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90
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91 <color_pos>#0000ff</color_pos>
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92 <color_neg>#ff0000</color_neg>
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93 <bicolor_pivot>mean</bicolor_pivot>
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94 </wiggle>
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95 </options>
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96 </track>
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97 <track cat="Colouring" format="wiggle">
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98 <files>
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99 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Manual - Inverted"/>
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100 </files>
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101
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102 <options>
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103 <wiggle>
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104 <type>JBrowse/View/Track/Wiggle/XYPlot</type>
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105 <variance_band>false</variance_band>
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106 <autoscale>local</autoscale>
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107
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108 <color_pos>#ff0000</color_pos>
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109 <color_neg>#0000ff</color_neg>
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110 <bicolor_pivot>mean</bicolor_pivot>
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111 </wiggle>
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112 </options>
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113 </track>
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114 <track cat="Colouring" format="wiggle">
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115 <files>
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116 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Nonstandard Pivot"/>
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117 </files>
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118
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119 <options>
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120 <wiggle>
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121 <type>JBrowse/View/Track/Wiggle/XYPlot</type>
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122 <variance_band>false</variance_band>
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123 <autoscale>local</autoscale>
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124
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125 <color_pos>#0000ff</color_pos>
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126 <color_neg>#ff0000</color_neg>
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127 <bicolor_pivot>100</bicolor_pivot>
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128 </wiggle>
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129 </options>
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130 </track>
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131 </tracks>
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132 </root>
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