Mercurial > repos > iuc > jbrowse
annotate test-data/bw/test.xml @ 24:fa30df9b79c2 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 309588eae8df8baffaf49fc00fb0d28106109ddf
| author | iuc |
|---|---|
| date | Wed, 16 Jan 2019 03:28:29 -0500 |
| parents | ff11d442feed |
| children |
| rev | line source |
|---|---|
| 3 | 1 <?xml version="1.0"?> |
| 2 <root> | |
| 3 <metadata> | |
| 4 <gencode>11</gencode> | |
| 5 <genomes> | |
| 6 <genome>test-data/merlin.fa</genome> | |
| 7 </genomes> | |
|
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ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
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8 <general> |
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ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
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9 <defaultLocation></defaultLocation> |
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ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
10 <trackPadding>40</trackPadding> |
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ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
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11 <shareLink>true</shareLink> |
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ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
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12 <aboutDescription></aboutDescription> |
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ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
13 <show_tracklist>true</show_tracklist> |
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ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
14 <show_nav>true</show_nav> |
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ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
15 <show_overview>false</show_overview> |
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ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
16 <show_menu>true</show_menu> |
|
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
17 <hideGenomeOptions>false</hideGenomeOptions> |
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ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
18 </general> |
| 3 | 19 </metadata> |
| 20 <tracks> | |
| 21 <track cat="Scaling" format="wiggle"> | |
| 22 <files> | |
| 23 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Auto Global"/> | |
| 24 </files> | |
| 25 | |
| 26 <options> | |
| 27 <wiggle> | |
| 28 <type>JBrowse/View/Track/Wiggle/XYPlot</type> | |
| 29 <variance_band>true</variance_band> | |
| 30 <autoscale>global</autoscale> | |
| 31 <color_pos>__auto__</color_pos> | |
| 32 <color_neg>__auto__</color_neg> | |
| 33 <bicolor_pivot>zero</bicolor_pivot> | |
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17
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
34 <scale>linear</scale> |
| 3 | 35 </wiggle> |
| 36 </options> | |
| 37 </track> | |
| 38 <track cat="Scaling" format="wiggle"> | |
| 39 <files> | |
| 40 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Auto Local"/> | |
| 41 </files> | |
| 42 | |
| 43 <options> | |
| 44 <wiggle> | |
| 45 <type>JBrowse/View/Track/Wiggle/XYPlot</type> | |
| 46 <variance_band>true</variance_band> | |
| 47 <autoscale>local</autoscale> | |
| 48 <color_pos>__auto__</color_pos> | |
| 49 <color_neg>__auto__</color_neg> | |
| 50 <bicolor_pivot>zero</bicolor_pivot> | |
|
17
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
51 <scale>linear</scale> |
| 3 | 52 </wiggle> |
| 53 </options> | |
| 54 </track> | |
| 55 <track cat="Scaling" format="wiggle"> | |
| 56 <files> | |
| 57 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Manual"/> | |
| 58 </files> | |
| 59 | |
| 60 <options> | |
| 61 <wiggle> | |
| 62 <type>JBrowse/View/Track/Wiggle/XYPlot</type> | |
| 63 <variance_band>false</variance_band> | |
| 64 <autoscale>fixed</autoscale> | |
| 65 <min>20</min> | |
| 66 <max>60</max> | |
| 67 <color_pos>__auto__</color_pos> | |
| 68 <color_neg>__auto__</color_neg> | |
| 69 <bicolor_pivot>zero</bicolor_pivot> | |
|
17
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
70 <scale>linear</scale> |
| 3 | 71 </wiggle> |
| 72 </options> | |
| 73 </track> | |
| 74 | |
| 75 | |
| 76 <track cat="Colouring" format="wiggle"> | |
| 77 <files> | |
| 78 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Auto A"/> | |
| 79 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Auto B"/> | |
| 80 </files> | |
| 81 | |
| 82 <options> | |
| 83 <wiggle> | |
| 84 <type>JBrowse/View/Track/Wiggle/XYPlot</type> | |
| 85 <variance_band>false</variance_band> | |
| 86 <autoscale>local</autoscale> | |
| 87 | |
| 88 <color_pos>__auto__</color_pos> | |
| 89 <color_neg>__auto__</color_neg> | |
| 90 <bicolor_pivot>mean</bicolor_pivot> | |
|
17
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
91 <scale>linear</scale> |
| 3 | 92 </wiggle> |
| 93 </options> | |
| 94 </track> | |
| 95 <track cat="Colouring" format="wiggle"> | |
| 96 <files> | |
| 97 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Manual"/> | |
| 98 </files> | |
| 99 | |
| 100 <options> | |
| 101 <wiggle> | |
| 102 <type>JBrowse/View/Track/Wiggle/XYPlot</type> | |
| 103 <variance_band>false</variance_band> | |
| 104 <autoscale>local</autoscale> | |
| 105 | |
| 106 <color_pos>#0000ff</color_pos> | |
| 107 <color_neg>#ff0000</color_neg> | |
| 108 <bicolor_pivot>mean</bicolor_pivot> | |
|
17
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
109 <scale>linear</scale> |
| 3 | 110 </wiggle> |
| 111 </options> | |
| 112 </track> | |
| 113 <track cat="Colouring" format="wiggle"> | |
| 114 <files> | |
| 115 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Manual - Inverted"/> | |
| 116 </files> | |
| 117 | |
| 118 <options> | |
| 119 <wiggle> | |
| 120 <type>JBrowse/View/Track/Wiggle/XYPlot</type> | |
| 121 <variance_band>false</variance_band> | |
| 122 <autoscale>local</autoscale> | |
| 123 | |
| 124 <color_pos>#ff0000</color_pos> | |
| 125 <color_neg>#0000ff</color_neg> | |
| 126 <bicolor_pivot>mean</bicolor_pivot> | |
|
17
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
127 <scale>log</scale> |
| 3 | 128 </wiggle> |
| 129 </options> | |
| 130 </track> | |
| 131 <track cat="Colouring" format="wiggle"> | |
| 132 <files> | |
| 133 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Nonstandard Pivot"/> | |
| 134 </files> | |
| 135 | |
| 136 <options> | |
| 137 <wiggle> | |
| 138 <type>JBrowse/View/Track/Wiggle/XYPlot</type> | |
| 139 <variance_band>false</variance_band> | |
| 140 <autoscale>local</autoscale> | |
| 141 | |
| 142 <color_pos>#0000ff</color_pos> | |
| 143 <color_neg>#ff0000</color_neg> | |
| 144 <bicolor_pivot>100</bicolor_pivot> | |
|
17
ff11d442feed
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
iuc
parents:
3
diff
changeset
|
145 <scale>linear</scale> |
| 3 | 146 </wiggle> |
| 147 </options> | |
| 148 </track> | |
| 149 </tracks> | |
| 150 </root> |