Mercurial > repos > iuc > jbrowse
comparison test-data/gff3/test.xml @ 29:112eb40ba6cf draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit d51ab68aa8a806f7d5a3ebc00638a2486a98a214
author | iuc |
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date | Fri, 05 Apr 2019 07:53:24 -0400 |
parents | 1cfc579079a6 |
children | ca2def38369c |
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28:d0743cb18ed8 | 29:112eb40ba6cf |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <root> | 2 <root> |
3 <metadata> | 3 <metadata> |
4 <gencode>11</gencode> | 4 <gencode>11</gencode> |
5 <genomes> | 5 <genomes> |
6 <genome path="/tmp/tmpWtvfKr/files/000/dataset_5.dat"> | 6 <genome path="/tmp/tmpTx5wXw/files/000/dataset_5.dat"> |
7 <metadata> | 7 <metadata> |
8 <dataset id="7b55dbb89df8f4e5" hid="1" | 8 <dataset id="7b55dbb89df8f4e5" hid="1" |
9 size="171.6 KB" | 9 size="171.6 KB" |
10 edam_format="format_1929" | 10 edam_format="format_1929" |
11 file_ext="fasta" /> | 11 file_ext="fasta" /> |
40 <galaxyUrl>http://localhost</galaxyUrl> | 40 <galaxyUrl>http://localhost</galaxyUrl> |
41 </metadata> | 41 </metadata> |
42 <tracks> | 42 <tracks> |
43 <track cat="Auto Coloured" format="gene_calls" visibility="default_off"> | 43 <track cat="Auto Coloured" format="gene_calls" visibility="default_off"> |
44 <files> | 44 <files> |
45 <trackFile path="/tmp/tmpWtvfKr/files/000/dataset_6.dat" ext="gff3" label="A.gff"> | 45 <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_6.dat" ext="gff3" label="gff3/A.gff"> |
46 <metadata> | 46 <metadata> |
47 <dataset id="fa6d20d0fb68383f" hid="2" | 47 <dataset id="fa6d20d0fb68383f" hid="2" |
48 size="2.3 KB" | 48 size="2.3 KB" |
49 edam_format="format_1975" | 49 edam_format="format_1975" |
50 file_ext="gff3" /> | 50 file_ext="gff3" /> |
55 <metadata | 55 <metadata |
56 dbkey="?" | 56 dbkey="?" |
57 data_lines="27" | 57 data_lines="27" |
58 comment_lines="19" | 58 comment_lines="19" |
59 columns="9" | 59 columns="9" |
60 column_names="" | 60 delimiter="__tc__" |
61 delimiter="__tc__" | 61 attributes="6" |
62 attributes="6" | 62 /> |
63 /> | 63 <tool |
64 <tool | 64 tool_id="upload1" |
65 tool_id="upload1" | 65 tool_version="1.1.6" |
66 tool_version="1.1.6" | 66 /> |
67 /> | 67 </metadata> |
68 </metadata> | 68 </trackFile> |
69 </trackFile> | 69 <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_7.dat" ext="gff3" label="gff3/B.gff"> |
70 <trackFile path="/tmp/tmpWtvfKr/files/000/dataset_7.dat" ext="gff3" label="B.gff"> | |
71 <metadata> | 70 <metadata> |
72 <dataset id="683bc220e21425bb" hid="3" | 71 <dataset id="683bc220e21425bb" hid="3" |
73 size="2.3 KB" | 72 size="2.3 KB" |
74 edam_format="format_1975" | 73 edam_format="format_1975" |
75 file_ext="gff3" /> | 74 file_ext="gff3" /> |
80 <metadata | 79 <metadata |
81 dbkey="?" | 80 dbkey="?" |
82 data_lines="27" | 81 data_lines="27" |
83 comment_lines="19" | 82 comment_lines="19" |
84 columns="9" | 83 columns="9" |
85 column_names="" | 84 delimiter="__tc__" |
86 delimiter="__tc__" | 85 attributes="6" |
87 attributes="6" | 86 /> |
88 /> | 87 <tool |
89 <tool | 88 tool_id="upload1" |
90 tool_id="upload1" | 89 tool_version="1.1.6" |
91 tool_version="1.1.6" | 90 /> |
92 /> | 91 </metadata> |
93 </metadata> | 92 </trackFile> |
94 </trackFile> | 93 <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_8.dat" ext="gff3" label="gff3/C.gff"> |
95 <trackFile path="/tmp/tmpWtvfKr/files/000/dataset_8.dat" ext="gff3" label="C.gff"> | |
96 <metadata> | 94 <metadata> |
97 <dataset id="a90a30fafe298e1e" hid="4" | 95 <dataset id="a90a30fafe298e1e" hid="4" |
98 size="2.3 KB" | 96 size="2.3 KB" |
99 edam_format="format_1975" | 97 edam_format="format_1975" |
100 file_ext="gff3" /> | 98 file_ext="gff3" /> |
105 <metadata | 103 <metadata |
106 dbkey="?" | 104 dbkey="?" |
107 data_lines="27" | 105 data_lines="27" |
108 comment_lines="19" | 106 comment_lines="19" |
109 columns="9" | 107 columns="9" |
110 column_names="" | 108 delimiter="__tc__" |
111 delimiter="__tc__" | 109 attributes="6" |
112 attributes="6" | 110 /> |
113 /> | 111 <tool |
114 <tool | 112 tool_id="upload1" |
115 tool_id="upload1" | 113 tool_version="1.1.6" |
116 tool_version="1.1.6" | 114 /> |
117 /> | 115 </metadata> |
118 </metadata> | 116 </trackFile> |
119 </trackFile> | 117 <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_9.dat" ext="gff3" label="gff3/D.gff"> |
120 <trackFile path="/tmp/tmpWtvfKr/files/000/dataset_9.dat" ext="gff3" label="D.gff"> | |
121 <metadata> | 118 <metadata> |
122 <dataset id="b842d972534ccb3e" hid="5" | 119 <dataset id="b842d972534ccb3e" hid="5" |
123 size="2.3 KB" | 120 size="2.3 KB" |
124 edam_format="format_1975" | 121 edam_format="format_1975" |
125 file_ext="gff3" /> | 122 file_ext="gff3" /> |
130 <metadata | 127 <metadata |
131 dbkey="?" | 128 dbkey="?" |
132 data_lines="27" | 129 data_lines="27" |
133 comment_lines="19" | 130 comment_lines="19" |
134 columns="9" | 131 columns="9" |
135 column_names="" | 132 delimiter="__tc__" |
136 delimiter="__tc__" | 133 attributes="6" |
137 attributes="6" | 134 /> |
138 /> | 135 <tool |
139 <tool | 136 tool_id="upload1" |
140 tool_id="upload1" | 137 tool_version="1.1.6" |
141 tool_version="1.1.6" | 138 /> |
142 /> | 139 </metadata> |
143 </metadata> | 140 </trackFile> |
144 </trackFile> | 141 </files> |
145 </files> | 142 |
146 | 143 <options> |
147 <options> | 144 <style> |
148 <style> | 145 <overridePlugins>False</overridePlugins> |
149 <overridePlugins>False</overridePlugins> | 146 <overrideDraggable>False</overrideDraggable> |
150 <overrideDraggable>False</overrideDraggable> | 147 <className>feature2</className> |
151 <className>feature</className> | |
152 <description>note,description</description> | 148 <description>note,description</description> |
153 <label>product,name,id</label> | 149 <label>product,name,id</label> |
154 <height>10px</height> | 150 <height>10px</height> |
155 <maxHeight>600</maxHeight> | 151 <maxHeight>600</maxHeight> |
156 </style> | 152 </style> |
162 </scaling> | 158 </scaling> |
163 <menus> | 159 <menus> |
164 </menus> | 160 </menus> |
165 | 161 |
166 <gff> | 162 <gff> |
167 <trackType>JBrowse/View/Track/CanvasFeatures</trackType> | 163 <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType> |
164 <topLevelFeatures>mRNA</topLevelFeatures> | |
168 <index>false</index> | 165 <index>false</index> |
169 </gff> | 166 </gff> |
170 </options> | 167 </options> |
171 </track> | 168 </track> |
172 <track cat="Ignore Scale" format="gene_calls" visibility="default_off"> | 169 <track cat="Ignore Scale" format="gene_calls" visibility="default_off"> |
173 <files> | 170 <files> |
174 <trackFile path="/tmp/tmpWtvfKr/files/000/dataset_10.dat" ext="gff3" label="1.gff"> | 171 <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_10.dat" ext="gff3" label="gff3/1.gff"> |
175 <metadata> | 172 <metadata> |
176 <dataset id="5449172d6ff5669b" hid="6" | 173 <dataset id="5449172d6ff5669b" hid="6" |
177 size="2.3 KB" | 174 size="2.3 KB" |
178 edam_format="format_1975" | 175 edam_format="format_1975" |
179 file_ext="gff3" /> | 176 file_ext="gff3" /> |
184 <metadata | 181 <metadata |
185 dbkey="?" | 182 dbkey="?" |
186 data_lines="27" | 183 data_lines="27" |
187 comment_lines="19" | 184 comment_lines="19" |
188 columns="9" | 185 columns="9" |
189 column_names="" | 186 delimiter="__tc__" |
190 delimiter="__tc__" | 187 attributes="6" |
191 attributes="6" | 188 /> |
192 /> | 189 <tool |
193 <tool | 190 tool_id="upload1" |
194 tool_id="upload1" | 191 tool_version="1.1.6" |
195 tool_version="1.1.6" | 192 /> |
196 /> | 193 </metadata> |
197 </metadata> | 194 </trackFile> |
198 </trackFile> | 195 </files> |
199 </files> | 196 |
200 | 197 <options> |
201 <options> | 198 <style> |
202 <style> | 199 <overridePlugins>False</overridePlugins> |
203 <overridePlugins>False</overridePlugins> | 200 <overrideDraggable>False</overrideDraggable> |
204 <overrideDraggable>False</overrideDraggable> | 201 <className>feature2</className> |
205 <className>feature</className> | |
206 <description>note,description</description> | 202 <description>note,description</description> |
207 <label>product,name,id</label> | 203 <label>product,name,id</label> |
208 <height>10px</height> | 204 <height>10px</height> |
209 <maxHeight>600</maxHeight> | 205 <maxHeight>600</maxHeight> |
210 </style> | 206 </style> |
216 </scaling> | 212 </scaling> |
217 <menus> | 213 <menus> |
218 </menus> | 214 </menus> |
219 | 215 |
220 <gff> | 216 <gff> |
221 <trackType>JBrowse/View/Track/CanvasFeatures</trackType> | 217 <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType> |
218 <topLevelFeatures>mRNA</topLevelFeatures> | |
222 <index>false</index> | 219 <index>false</index> |
223 </gff> | 220 </gff> |
224 </options> | 221 </options> |
225 </track> | 222 </track> |
226 <track cat="Scaled Colour" format="gene_calls" visibility="default_off"> | 223 <track cat="Scaled Colour" format="gene_calls" visibility="default_off"> |
227 <files> | 224 <files> |
228 <trackFile path="/tmp/tmpWtvfKr/files/000/dataset_10.dat" ext="gff3" label="1.gff"> | 225 <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_10.dat" ext="gff3" label="gff3/1.gff"> |
229 <metadata> | 226 <metadata> |
230 <dataset id="5449172d6ff5669b" hid="6" | 227 <dataset id="5449172d6ff5669b" hid="6" |
231 size="2.3 KB" | 228 size="2.3 KB" |
232 edam_format="format_1975" | 229 edam_format="format_1975" |
233 file_ext="gff3" /> | 230 file_ext="gff3" /> |
238 <metadata | 235 <metadata |
239 dbkey="?" | 236 dbkey="?" |
240 data_lines="27" | 237 data_lines="27" |
241 comment_lines="19" | 238 comment_lines="19" |
242 columns="9" | 239 columns="9" |
243 column_names="" | 240 delimiter="__tc__" |
244 delimiter="__tc__" | 241 attributes="6" |
245 attributes="6" | 242 /> |
246 /> | 243 <tool |
247 <tool | 244 tool_id="upload1" |
248 tool_id="upload1" | 245 tool_version="1.1.6" |
249 tool_version="1.1.6" | 246 /> |
250 /> | 247 </metadata> |
251 </metadata> | 248 </trackFile> |
252 </trackFile> | 249 </files> |
253 </files> | 250 |
254 | 251 <options> |
255 <options> | 252 <style> |
256 <style> | 253 <overridePlugins>False</overridePlugins> |
257 <overridePlugins>False</overridePlugins> | 254 <overrideDraggable>False</overrideDraggable> |
258 <overrideDraggable>False</overrideDraggable> | 255 <className>feature2</className> |
259 <className>feature</className> | |
260 <description>note,description</description> | 256 <description>note,description</description> |
261 <label>product,name,id</label> | 257 <label>product,name,id</label> |
262 <height>10px</height> | 258 <height>10px</height> |
263 <maxHeight>600</maxHeight> | 259 <maxHeight>600</maxHeight> |
264 </style> | 260 </style> |
276 </scaling> | 272 </scaling> |
277 <menus> | 273 <menus> |
278 </menus> | 274 </menus> |
279 | 275 |
280 <gff> | 276 <gff> |
281 <trackType>JBrowse/View/Track/CanvasFeatures</trackType> | 277 <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType> |
278 <topLevelFeatures>mRNA</topLevelFeatures> | |
282 <index>false</index> | 279 <index>false</index> |
283 </gff> | 280 </gff> |
284 </options> | 281 </options> |
285 </track> | 282 </track> |
286 <track cat="Scaled Colour" format="gene_calls" visibility="default_off"> | 283 <track cat="Scaled Colour" format="gene_calls" visibility="default_off"> |
287 <files> | 284 <files> |
288 <trackFile path="/tmp/tmpWtvfKr/files/000/dataset_10.dat" ext="gff3" label="1.gff"> | 285 <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_10.dat" ext="gff3" label="gff3/1.gff"> |
289 <metadata> | 286 <metadata> |
290 <dataset id="5449172d6ff5669b" hid="6" | 287 <dataset id="5449172d6ff5669b" hid="6" |
291 size="2.3 KB" | 288 size="2.3 KB" |
292 edam_format="format_1975" | 289 edam_format="format_1975" |
293 file_ext="gff3" /> | 290 file_ext="gff3" /> |
298 <metadata | 295 <metadata |
299 dbkey="?" | 296 dbkey="?" |
300 data_lines="27" | 297 data_lines="27" |
301 comment_lines="19" | 298 comment_lines="19" |
302 columns="9" | 299 columns="9" |
303 column_names="" | 300 delimiter="__tc__" |
304 delimiter="__tc__" | 301 attributes="6" |
305 attributes="6" | 302 /> |
306 /> | 303 <tool |
307 <tool | 304 tool_id="upload1" |
308 tool_id="upload1" | 305 tool_version="1.1.6" |
309 tool_version="1.1.6" | 306 /> |
310 /> | 307 </metadata> |
311 </metadata> | 308 </trackFile> |
312 </trackFile> | 309 </files> |
313 </files> | 310 |
314 | 311 <options> |
315 <options> | 312 <style> |
316 <style> | 313 <overridePlugins>False</overridePlugins> |
317 <overridePlugins>False</overridePlugins> | 314 <overrideDraggable>False</overrideDraggable> |
318 <overrideDraggable>False</overrideDraggable> | 315 <className>feature2</className> |
319 <className>feature</className> | |
320 <description>note,description</description> | 316 <description>note,description</description> |
321 <label>product,name,id</label> | 317 <label>product,name,id</label> |
322 <height>10px</height> | 318 <height>10px</height> |
323 <maxHeight>600</maxHeight> | 319 <maxHeight>600</maxHeight> |
324 </style> | 320 </style> |
336 </scaling> | 332 </scaling> |
337 <menus> | 333 <menus> |
338 </menus> | 334 </menus> |
339 | 335 |
340 <gff> | 336 <gff> |
341 <trackType>JBrowse/View/Track/CanvasFeatures</trackType> | 337 <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType> |
338 <topLevelFeatures>mRNA</topLevelFeatures> | |
342 <index>false</index> | 339 <index>false</index> |
343 </gff> | 340 </gff> |
344 </options> | 341 </options> |
345 </track> | 342 </track> |
346 <track cat="Scaled Colour" format="gene_calls" visibility="default_off"> | 343 <track cat="Scaled Colour" format="gene_calls" visibility="default_off"> |
347 <files> | 344 <files> |
348 <trackFile path="/tmp/tmpWtvfKr/files/000/dataset_10.dat" ext="gff3" label="1.gff"> | 345 <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_10.dat" ext="gff3" label="gff3/1.gff"> |
349 <metadata> | 346 <metadata> |
350 <dataset id="5449172d6ff5669b" hid="6" | 347 <dataset id="5449172d6ff5669b" hid="6" |
351 size="2.3 KB" | 348 size="2.3 KB" |
352 edam_format="format_1975" | 349 edam_format="format_1975" |
353 file_ext="gff3" /> | 350 file_ext="gff3" /> |
358 <metadata | 355 <metadata |
359 dbkey="?" | 356 dbkey="?" |
360 data_lines="27" | 357 data_lines="27" |
361 comment_lines="19" | 358 comment_lines="19" |
362 columns="9" | 359 columns="9" |
363 column_names="" | 360 delimiter="__tc__" |
364 delimiter="__tc__" | 361 attributes="6" |
365 attributes="6" | 362 /> |
366 /> | 363 <tool |
367 <tool | 364 tool_id="upload1" |
368 tool_id="upload1" | 365 tool_version="1.1.6" |
369 tool_version="1.1.6" | 366 /> |
370 /> | 367 </metadata> |
371 </metadata> | 368 </trackFile> |
372 </trackFile> | 369 </files> |
373 </files> | 370 |
374 | 371 <options> |
375 <options> | 372 <style> |
376 <style> | 373 <overridePlugins>False</overridePlugins> |
377 <overridePlugins>False</overridePlugins> | 374 <overrideDraggable>False</overrideDraggable> |
378 <overrideDraggable>False</overrideDraggable> | 375 <className>feature2</className> |
379 <className>feature</className> | |
380 <description>note,description</description> | 376 <description>note,description</description> |
381 <label>product,name,id</label> | 377 <label>product,name,id</label> |
382 <height>10px</height> | 378 <height>10px</height> |
383 <maxHeight>600</maxHeight> | 379 <maxHeight>600</maxHeight> |
384 </style> | 380 </style> |
398 </scaling> | 394 </scaling> |
399 <menus> | 395 <menus> |
400 </menus> | 396 </menus> |
401 | 397 |
402 <gff> | 398 <gff> |
403 <trackType>JBrowse/View/Track/CanvasFeatures</trackType> | 399 <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType> |
400 <topLevelFeatures>mRNA</topLevelFeatures> | |
404 <index>false</index> | 401 <index>false</index> |
405 </gff> | 402 </gff> |
406 </options> | 403 </options> |
407 </track> | 404 </track> |
408 <track cat="Scaled Colour" format="gene_calls" visibility="default_off"> | 405 <track cat="Scaled Colour" format="gene_calls" visibility="default_off"> |
409 <files> | 406 <files> |
410 <trackFile path="/tmp/tmpWtvfKr/files/000/dataset_10.dat" ext="gff3" label="1.gff"> | 407 <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_10.dat" ext="gff3" label="gff3/1.gff"> |
411 <metadata> | 408 <metadata> |
412 <dataset id="5449172d6ff5669b" hid="6" | 409 <dataset id="5449172d6ff5669b" hid="6" |
413 size="2.3 KB" | 410 size="2.3 KB" |
414 edam_format="format_1975" | 411 edam_format="format_1975" |
415 file_ext="gff3" /> | 412 file_ext="gff3" /> |
420 <metadata | 417 <metadata |
421 dbkey="?" | 418 dbkey="?" |
422 data_lines="27" | 419 data_lines="27" |
423 comment_lines="19" | 420 comment_lines="19" |
424 columns="9" | 421 columns="9" |
425 column_names="" | 422 delimiter="__tc__" |
426 delimiter="__tc__" | 423 attributes="6" |
427 attributes="6" | 424 /> |
428 /> | 425 <tool |
429 <tool | 426 tool_id="upload1" |
430 tool_id="upload1" | 427 tool_version="1.1.6" |
431 tool_version="1.1.6" | 428 /> |
432 /> | 429 </metadata> |
433 </metadata> | 430 </trackFile> |
434 </trackFile> | 431 </files> |
435 </files> | 432 |
436 | 433 <options> |
437 <options> | 434 <style> |
438 <style> | 435 <overridePlugins>False</overridePlugins> |
439 <overridePlugins>False</overridePlugins> | 436 <overrideDraggable>False</overrideDraggable> |
440 <overrideDraggable>False</overrideDraggable> | 437 <className>feature2</className> |
441 <className>feature</className> | |
442 <description>note,description</description> | 438 <description>note,description</description> |
443 <label>product,name,id</label> | 439 <label>product,name,id</label> |
444 <height>10px</height> | 440 <height>10px</height> |
445 <maxHeight>600</maxHeight> | 441 <maxHeight>600</maxHeight> |
446 </style> | 442 </style> |
460 </scaling> | 456 </scaling> |
461 <menus> | 457 <menus> |
462 </menus> | 458 </menus> |
463 | 459 |
464 <gff> | 460 <gff> |
465 <trackType>JBrowse/View/Track/CanvasFeatures</trackType> | 461 <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType> |
462 <topLevelFeatures>mRNA</topLevelFeatures> | |
466 <index>false</index> | 463 <index>false</index> |
467 </gff> | 464 </gff> |
468 </options> | 465 </options> |
469 </track> | 466 </track> |
470 <track cat="Realistic" format="gene_calls" visibility="default_off"> | 467 <track cat="Realistic" format="gene_calls" visibility="default_off"> |
471 <files> | 468 <files> |
472 <trackFile path="/tmp/tmpWtvfKr/files/000/dataset_11.dat" ext="gff3" label="interpro.gff"> | 469 <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_11.dat" ext="gff3" label="gff3/interpro.gff"> |
473 <metadata> | 470 <metadata> |
474 <dataset id="9ce08b2254e4d5ed" hid="7" | 471 <dataset id="9ce08b2254e4d5ed" hid="7" |
475 size="103.3 KB" | 472 size="103.3 KB" |
476 edam_format="format_1975" | 473 edam_format="format_1975" |
477 file_ext="gff3" /> | 474 file_ext="gff3" /> |
482 <metadata | 479 <metadata |
483 dbkey="?" | 480 dbkey="?" |
484 data_lines="556" | 481 data_lines="556" |
485 comment_lines="2" | 482 comment_lines="2" |
486 columns="9" | 483 columns="9" |
487 column_names="" | |
488 delimiter="__tc__" | 484 delimiter="__tc__" |
489 attributes="11" | 485 attributes="11" |
490 /> | 486 /> |
491 <tool | 487 <tool |
492 tool_id="upload1" | 488 tool_id="upload1" |
498 | 494 |
499 <options> | 495 <options> |
500 <style> | 496 <style> |
501 <overridePlugins>False</overridePlugins> | 497 <overridePlugins>False</overridePlugins> |
502 <overrideDraggable>False</overrideDraggable> | 498 <overrideDraggable>False</overrideDraggable> |
503 <className>feature</className> | 499 <className>feature2</className> |
504 <description>note,description</description> | 500 <description>note,description</description> |
505 <label>product,name,id</label> | 501 <label>product,name,id</label> |
506 <height>10px</height> | 502 <height>10px</height> |
507 <maxHeight>600</maxHeight> | 503 <maxHeight>600</maxHeight> |
508 </style> | 504 </style> |
514 </scaling> | 510 </scaling> |
515 <menus> | 511 <menus> |
516 </menus> | 512 </menus> |
517 | 513 |
518 <gff> | 514 <gff> |
519 <trackType>JBrowse/View/Track/CanvasFeatures</trackType> | 515 <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType> |
516 <topLevelFeatures>mRNA</topLevelFeatures> | |
520 <index>false</index> | 517 <index>false</index> |
521 </gff> | 518 </gff> |
522 </options> | 519 </options> |
523 </track> | 520 </track> |
524 <track cat="Realistic" format="gene_calls" visibility="default_off"> | 521 <track cat="Realistic" format="gene_calls" visibility="default_off"> |
525 <files> | 522 <files> |
526 <trackFile path="/tmp/tmpWtvfKr/files/000/dataset_12.dat" ext="gff3" label="2.gff"> | 523 <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_12.dat" ext="gff3" label="gff3/2.gff"> |
527 <metadata> | 524 <metadata> |
528 <dataset id="80b8022ff3f677b7" hid="8" | 525 <dataset id="80b8022ff3f677b7" hid="8" |
529 size="326 bytes" | 526 size="326 bytes" |
530 edam_format="format_1975" | 527 edam_format="format_1975" |
531 file_ext="gff3" /> | 528 file_ext="gff3" /> |
536 <metadata | 533 <metadata |
537 dbkey="?" | 534 dbkey="?" |
538 data_lines="3" | 535 data_lines="3" |
539 comment_lines="3" | 536 comment_lines="3" |
540 columns="9" | 537 columns="9" |
541 column_names="" | |
542 delimiter="__tc__" | 538 delimiter="__tc__" |
543 attributes="4" | 539 attributes="4" |
544 /> | 540 /> |
545 <tool | 541 <tool |
546 tool_id="upload1" | 542 tool_id="upload1" |
552 | 548 |
553 <options> | 549 <options> |
554 <style> | 550 <style> |
555 <overridePlugins>False</overridePlugins> | 551 <overridePlugins>False</overridePlugins> |
556 <overrideDraggable>False</overrideDraggable> | 552 <overrideDraggable>False</overrideDraggable> |
557 <className>feature</className> | 553 <className>feature2</className> |
558 <description>note,description</description> | 554 <description>note,description</description> |
559 <label>product,name,id</label> | 555 <label>product,name,id</label> |
560 <height>10px</height> | 556 <height>10px</height> |
561 <maxHeight>600</maxHeight> | 557 <maxHeight>600</maxHeight> |
562 </style> | 558 </style> |
568 </scaling> | 564 </scaling> |
569 <menus> | 565 <menus> |
570 </menus> | 566 </menus> |
571 | 567 |
572 <gff> | 568 <gff> |
573 <trackType>JBrowse/View/Track/CanvasFeatures</trackType> | 569 <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType> |
570 <topLevelFeatures>mRNA</topLevelFeatures> | |
574 <match>cDNA_match</match> | 571 <match>cDNA_match</match> |
575 <index>false</index> | 572 <index>false</index> |
576 </gff> | 573 </gff> |
577 </options> | 574 </options> |
578 </track> | 575 </track> |