Mercurial > repos > iuc > jbrowse

comparison jbrowse.py @ 21:1c718d8b3532 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 9cac72c004cc7ef57be997e2fdafb3b1839a300f
author iuc
date Tue, 11 Sep 2018 07:11:44 -0400
parents 558d652cd681
children 5f70e7fe6077
comparison
equal deleted inserted replaced
20:558d652cd681 21:1c718d8b3532
570 clientConfig = trackData['style'] 570 clientConfig = trackData['style']
571 del config['style'] 571 del config['style']
572 572
573 if 'match' in gffOpts: 573 if 'match' in gffOpts:
574 config['glyph'] = 'JBrowse/View/FeatureGlyph/Segments' 574 config['glyph'] = 'JBrowse/View/FeatureGlyph/Segments'
575 cmd += ['--type', gffOpts['match']] 575 if bool(gffOpts['match']):
576 # Can be empty for CanvasFeatures = will take all by default
577 cmd += ['--type', gffOpts['match']]
576 578
577 cmd += ['--clientConfig', json.dumps(clientConfig), 579 cmd += ['--clientConfig', json.dumps(clientConfig),
578 ] 580 ]
579 581
580 trackType = 'JBrowse/View/Track/CanvasFeatures' 582 trackType = 'JBrowse/View/Track/CanvasFeatures'