Mercurial > repos > iuc > jbrowse

comparison all_fasta.loc.sample @ 7:1e74f16adaa1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 942848a0ccd21064ad5d9ee237d1442a5ef47664
author iuc
date Sun, 26 Jun 2016 10:50:15 -0400
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6:ecbdfc775b9a 7:1e74f16adaa1
1 #This file lists the locations and dbkeys of all the fasta files
2 #under the "genome" directory (a directory that contains a directory
3 #for each build). The script extract_fasta.py will generate the file
4 #all_fasta.loc. This file has the format (white space characters are
5 #TAB characters):
6 #
7 #<unique_build_id> <dbkey> <display_name> <file_path>
8 #
9 #So, all_fasta.loc could look something like this:
10 #
11 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa
12 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa
13 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa
14 #
15 #Your all_fasta.loc file should contain an entry for each individual
16 #fasta file. So there will be multiple fasta files for each build,
17 #such as with hg19 above.
18 #