Mercurial > repos > iuc > jbrowse
comparison macros.xml @ 31:2bb2e07a7a21 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 12dff0abf006f6c81f6462cdf4ea9c0c740d1e9c
author | iuc |
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date | Mon, 15 Apr 2019 10:31:26 -0400 |
parents | ca2def38369c |
children | 6b774e9d6387 |
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30:ca2def38369c | 31:2bb2e07a7a21 |
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12 <requirement type="package" version="0.2.6">tabix</requirement> | 12 <requirement type="package" version="0.2.6">tabix</requirement> |
13 <yield/> | 13 <yield/> |
14 </requirements> | 14 </requirements> |
15 </xml> | 15 </xml> |
16 <token name="@DATA_DIR@">\$GALAXY_JBROWSE_SHARED_DIR</token> | 16 <token name="@DATA_DIR@">\$GALAXY_JBROWSE_SHARED_DIR</token> |
17 <token name="@WRAPPER_VERSION@">galaxy2</token> | 17 <token name="@WRAPPER_VERSION@">galaxy3</token> |
18 <token name="@ATTRIBUTION@"><![CDATA[ | 18 <token name="@ATTRIBUTION@"><![CDATA[ |
19 **Attribution** | 19 **Attribution** |
20 | 20 |
21 This Galaxy tool relies on the JBrowse, maintained by the GMOD Community. The Galaxy wrapper is developed by Eric Rasche | 21 This Galaxy tool relies on the JBrowse, maintained by the GMOD Community. The Galaxy wrapper is developed by Eric Rasche |
22 ]]> | 22 ]]> |
285 <param label="JBrowse maxHeight" | 285 <param label="JBrowse maxHeight" |
286 type="text" | 286 type="text" |
287 name="max_height" | 287 name="max_height" |
288 value="@MAXHEIGHT@" | 288 value="@MAXHEIGHT@" |
289 help="Maximum height that the track is permitted to reach in pixels."/> | 289 help="Maximum height that the track is permitted to reach in pixels."/> |
290 </section> | |
291 </xml> | |
292 | |
293 <xml name="track_custom_config"> | |
294 <section name="jb_custom_config" title="JBrowse Custom Track Config [Advanced]" expanded="false"> | |
295 <repeat name="option" title="Custom Track Config Option"> | |
296 <param name="opt_key" type="text" label="Key for JBrowse track config option" | |
297 help="Multilevel keys (e.g., 'style.label') are delimited by a period character ('.')."> | |
298 <validator type="regex" message="Key must consist of alphanumeric characters only, possibly separated by the period character ('.')">^[\w]+(\.\w+)*$</validator> | |
299 </param> | |
300 <conditional name="opt_value"> | |
301 <param name="val_type" type="select" label="Choose the type of value for the option"> | |
302 <option value="text" selected="true">Text</option> | |
303 <option value="integer">Integer number</option> | |
304 <option value="float">Floating point number</option> | |
305 <option value="boolean">Boolean</option> | |
306 </param> | |
307 <when value="text"> | |
308 <param name="val" type="text" label="Value for custom track option." | |
309 help="Will override other track options set elsewhere."> | |
310 <validator type="empty_field" /> | |
311 </param> | |
312 </when> | |
313 <when value="integer"> | |
314 <param name="val" type="integer" value="0" label="Value for custom track option." | |
315 help="Will override other track options set elsewhere." /> | |
316 </when> | |
317 <when value="float"> | |
318 <param name="val" type="float" value="0" label="Value for custom track option." | |
319 help="Will override other track options set elsewhere." /> | |
320 </when> | |
321 <when value="boolean"> | |
322 <param name="val" type="boolean" truevalue="true" falsevalue="false" | |
323 label="Value for custom track option." | |
324 help="Will override other track options set elsewhere." /> | |
325 </when> | |
326 </conditional> | |
327 </repeat> | |
290 </section> | 328 </section> |
291 </xml> | 329 </xml> |
292 | 330 |
293 <xml name="track_menu"> | 331 <xml name="track_menu"> |
294 <section name="jbmenu" title="JBrowse Contextual Menu options [Advanced]" expanded="false"> | 332 <section name="jbmenu" title="JBrowse Contextual Menu options [Advanced]" expanded="false"> |