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comparison jbrowse.xml @ 13:69c5e9c0add0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit bb4fe9cc4bc03918afa525569ed36144a819ce79
author iuc
date Thu, 09 Feb 2017 12:36:16 -0500
parents db5fe5a3176a
children b5c5470d7c09
comparison
equal deleted inserted replaced
12:db5fe5a3176a 13:69c5e9c0add0
224 #if str($track.data_format.track_config.canvas_options.subParts) != "": 224 #if str($track.data_format.track_config.canvas_options.subParts) != "":
225 <subParts>${track.data_format.track_config.canvas_options.subParts}</subParts> 225 <subParts>${track.data_format.track_config.canvas_options.subParts}</subParts>
226 #end if 226 #end if
227 #if str($track.data_format.track_config.canvas_options.impliedUTRs) != "false": 227 #if str($track.data_format.track_config.canvas_options.impliedUTRs) != "false":
228 <impliedUTRs>${track.data_format.track_config.canvas_options.impliedUTRs}</impliedUTRs> 228 <impliedUTRs>${track.data_format.track_config.canvas_options.impliedUTRs}</impliedUTRs>
229 #end if
230 #else if $track.data_format.track_config.track_class == 'JBrowse/View/Track/HTMLFeatures':
231 #if str($track.data_format.track_config.html_options.transcriptType) != "":
232 <transcriptType>${track.data_format.track_config.html_options.transcriptType}</transcriptType>
229 #end if 233 #end if
230 #end if 234 #end if
231 #if $track.data_format.match_part.match_part_select: 235 #if $track.data_format.match_part.match_part_select:
232 <match>${track.data_format.match_part.name}</match> 236 <match>${track.data_format.match_part.name}</match>
233 #end if 237 #end if
418 truevalue="true" 422 truevalue="true"
419 falsevalue="false" 423 falsevalue="false"
420 help="Check this your input files does not contain UTR features, but the UTR can be 'implied' from the difference between the exon and CDS boundaries"/> 424 help="Check this your input files does not contain UTR features, but the UTR can be 'implied' from the difference between the exon and CDS boundaries"/>
421 </section> 425 </section>
422 </when> 426 </when>
423 <when value="JBrowse/View/Track/HTMLFeatures" /> 427 <when value="JBrowse/View/Track/HTMLFeatures">
428 <section name="html_options" title="HTMLFeatures Options [Advanced]" expanded="false">
429 <param label="Transcript type"
430 name="transcriptType"
431 type="text"
432 value=""
433 help="If your input files represents transcripts, give the name of the corresponding features here (e.g. 'mRNA' or 'transcript')"
434 optional="True"/>
435 </section>
436 </when>
424 </conditional> 437 </conditional>
425 <expand macro="track_styling" /> 438 <expand macro="track_styling" />
426 <expand macro="color_selection" /> 439 <expand macro="color_selection" />
427 <expand macro="track_menu" /> 440 <expand macro="track_menu" />
428 <expand macro="track_display" /> 441 <expand macro="track_display" />