Mercurial > repos > iuc > jbrowse

comparison test-data/bw/test.xml @ 3:7342f467507b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded v0.4 of JBrowse
author iuc
date Thu, 31 Dec 2015 13:58:43 -0500
parents
children ff11d442feed
comparison
equal deleted inserted replaced
2:b6a0e126dbee 3:7342f467507b
1 <?xml version="1.0"?>
2 <root>
3 <metadata>
4 <gencode>11</gencode>
5 <genomes>
6 <genome>test-data/merlin.fa</genome>
7 </genomes>
8 </metadata>
9 <tracks>
10 <track cat="Scaling" format="wiggle">
11 <files>
12 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Auto Global"/>
13 </files>
14
15 <options>
16 <wiggle>
17 <type>JBrowse/View/Track/Wiggle/XYPlot</type>
18 <variance_band>true</variance_band>
19 <autoscale>global</autoscale>
20 <color_pos>__auto__</color_pos>
21 <color_neg>__auto__</color_neg>
22 <bicolor_pivot>zero</bicolor_pivot>
23 </wiggle>
24 </options>
25 </track>
26 <track cat="Scaling" format="wiggle">
27 <files>
28 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Auto Local"/>
29 </files>
30
31 <options>
32 <wiggle>
33 <type>JBrowse/View/Track/Wiggle/XYPlot</type>
34 <variance_band>true</variance_band>
35 <autoscale>local</autoscale>
36 <color_pos>__auto__</color_pos>
37 <color_neg>__auto__</color_neg>
38 <bicolor_pivot>zero</bicolor_pivot>
39 </wiggle>
40 </options>
41 </track>
42 <track cat="Scaling" format="wiggle">
43 <files>
44 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Manual"/>
45 </files>
46
47 <options>
48 <wiggle>
49 <type>JBrowse/View/Track/Wiggle/XYPlot</type>
50 <variance_band>false</variance_band>
51 <autoscale>fixed</autoscale>
52 <min>20</min>
53 <max>60</max>
54 <color_pos>__auto__</color_pos>
55 <color_neg>__auto__</color_neg>
56 <bicolor_pivot>zero</bicolor_pivot>
57 </wiggle>
58 </options>
59 </track>
60
61
62 <track cat="Colouring" format="wiggle">
63 <files>
64 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Auto A"/>
65 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Auto B"/>
66 </files>
67
68 <options>
69 <wiggle>
70 <type>JBrowse/View/Track/Wiggle/XYPlot</type>
71 <variance_band>false</variance_band>
72 <autoscale>local</autoscale>
73
74 <color_pos>__auto__</color_pos>
75 <color_neg>__auto__</color_neg>
76 <bicolor_pivot>mean</bicolor_pivot>
77 </wiggle>
78 </options>
79 </track>
80 <track cat="Colouring" format="wiggle">
81 <files>
82 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Manual"/>
83 </files>
84
85 <options>
86 <wiggle>
87 <type>JBrowse/View/Track/Wiggle/XYPlot</type>
88 <variance_band>false</variance_band>
89 <autoscale>local</autoscale>
90
91 <color_pos>#0000ff</color_pos>
92 <color_neg>#ff0000</color_neg>
93 <bicolor_pivot>mean</bicolor_pivot>
94 </wiggle>
95 </options>
96 </track>
97 <track cat="Colouring" format="wiggle">
98 <files>
99 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Manual - Inverted"/>
100 </files>
101
102 <options>
103 <wiggle>
104 <type>JBrowse/View/Track/Wiggle/XYPlot</type>
105 <variance_band>false</variance_band>
106 <autoscale>local</autoscale>
107
108 <color_pos>#ff0000</color_pos>
109 <color_neg>#0000ff</color_neg>
110 <bicolor_pivot>mean</bicolor_pivot>
111 </wiggle>
112 </options>
113 </track>
114 <track cat="Colouring" format="wiggle">
115 <files>
116 <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Nonstandard Pivot"/>
117 </files>
118
119 <options>
120 <wiggle>
121 <type>JBrowse/View/Track/Wiggle/XYPlot</type>
122 <variance_band>false</variance_band>
123 <autoscale>local</autoscale>
124
125 <color_pos>#0000ff</color_pos>
126 <color_neg>#ff0000</color_neg>
127 <bicolor_pivot>100</bicolor_pivot>
128 </wiggle>
129 </options>
130 </track>
131 </tracks>
132 </root>