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comparison test-data/gff3/1.gff @ 3:7342f467507b draft

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Uploaded v0.4 of JBrowse
author iuc
date Thu, 31 Dec 2015 13:58:43 -0500
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2:b6a0e126dbee 3:7342f467507b
1 ##gff-version 3
2 ##sequence-region Merlin 1 172788
3 Merlin GeneMark.hmm gene 10 30 . + . ID=Merlin_1;seqid=Merlin
4 Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_1_mRNA;Parent=Merlin_1
5 Merlin GeneMark.hmm CDS 14 20 1000 + 0 ID=Merlin_1_CDS ;Parent=Merlin_1_mRNA
6 Merlin GeneMark.hmm CDS 24 30 500 + 0 ID=Merlin_1_CDS ;Parent=Merlin_1_mRNA
7
8 Merlin GeneMark.hmm gene 14 30 . + . ID=Merlin_2;seqid=Merlin;color=#00ff00
9 Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_2_mRNA;seqid=Merlin;color=#00ff00;Parent=Merlin_2
10 Merlin GeneMark.hmm CDS 14 20 500 + 0 ID=Merlin_2_CDS ;Parent=Merlin_2_mRNA;color=#0000ff
11 Merlin GeneMark.hmm CDS 24 30 750 + 0 ID=Merlin_2_CDS ;Parent=Merlin_2_mRNA;color=#00ff00
12
13 Merlin GeneMark.hmm gene 10 30 . + . ID=Merlin_3;seqid=Merlin
14 Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_3A_mRNA;Parent=Merlin_3;color=#0000ff
15 Merlin GeneMark.hmm CDS 14 18 1000 + 0 ID=Merlin_3A_CDS ;Parent=Merlin_3A_mRNA;color=#0000ff
16 Merlin GeneMark.hmm CDS 20 30 800 + 0 ID=Merlin_3A_CDS ;Parent=Merlin_3A_mRNA;color=#0000ff
17 Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_3B_mRNA;Parent=Merlin_3;color=#0000ff
18 Merlin GeneMark.hmm CDS 14 22 400 + 0 ID=Merlin_3B_CDS ;Parent=Merlin_3B_mRNA;color=#0000ff
19 Merlin GeneMark.hmm CDS 24 30 1000 + 0 ID=Merlin_3B_CDS ;Parent=Merlin_3B_mRNA;color=#0000ff
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23 Merlin exonerate gene 1740 2300 . + . Name=Apple3;Note=Gene with two splicing models;ID=1
24 Merlin exonerate mRNA 1740 2300 . + . Name=Apple3-a;Note=mRNA A with both CDSs and UTRs;ID=1A;Parent=1;
25 Merlin exonerate UTR 1740 1799 . + . Parent=1A
26 Merlin exonerate CDS 1900 2080 . + 0 Parent=1A
27 Merlin exonerate CDS 2100 2120 . + 2 Parent=1A
28 Merlin exonerate UTR 2120 2300 . + . Parent=1A
29 Merlin exonerate mRNA 1740 2300 . + . Name=Apple3-b;Note=mRNA B with both CDSs and UTRs;ID=1B;Parent=1;
30 Merlin exonerate UTR 1740 1799 . + . Parent=1B
31 Merlin exonerate CDS 1800 1880 . + 0 Parent=1B
32 Merlin exonerate CDS 1900 1950 . + 1 Parent=1B
33 Merlin exonerate CDS 2100 2120 . + 2 Parent=1B
34 Merlin exonerate UTR 2120 2300 . + . Parent=1B
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38 # {
39 # "baseUrl": "http://localhost:8000/out/data/"
40 # "compress": 0,
41 # "label": "Transcript",
42 # "storeClass": "JBrowse/Store/SeqFeature/NCList",
43 # "trackType": "JBrowse/View/Track/CanvasFeatures",
44 # "type": "JBrowse/View/Track/CanvasFeatures",
45 # "urlTemplate": "tracks/42ff9cb16c0509f0abb4a76ce14077bc_0/{refseq}/trackData.json",
46 # }