Mercurial > repos > iuc > jbrowse
comparison test-data/vcf/test.vcf @ 3:7342f467507b draft
Uploaded v0.4 of JBrowse
| author | iuc |
|---|---|
| date | Thu, 31 Dec 2015 13:58:43 -0500 |
| parents | |
| children |
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| 2:b6a0e126dbee | 3:7342f467507b |
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| 1 ##fileformat=VCFv4.0 | |
| 2 ##fileDate=20090805 | |
| 3 ##source=myImputationProgramV3.1 | |
| 4 ##reference=1000GenomesPilot-NCBI36 | |
| 5 ##phasing=partial | |
| 6 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data"> | |
| 7 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> | |
| 8 ##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency"> | |
| 9 ##INFO=<ID=AA,Number=1,Type=String,Description="Ancestral Allele"> | |
| 10 ##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP membership, build 129"> | |
| 11 ##INFO=<ID=H2,Number=0,Type=Flag,Description="HapMap2 membership"> | |
| 12 ##FILTER=<ID=q10,Description="Quality below 10"> | |
| 13 ##FILTER=<ID=s50,Description="Less than 50% of samples have data"> | |
| 14 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | |
| 15 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> | |
| 16 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> | |
| 17 ##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality"> | |
| 18 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA00001 NA00002 NA00003 | |
| 19 Merlin 14370 rs6054257 G A 29 PASS NS=3;DP=14;AF=0.5;DB;H2 GT:GQ:DP:HQ 0|0:48:1:51,51 1|0:48:8:51,51 1/1:43:5:.,. | |
| 20 Merlin 17330 . T A 3 q10 NS=3;DP=11;AF=0.017 GT:GQ:DP:HQ 0|0:49:3:58,50 0|1:3:5:65,3 0/0:41:3 | |
| 21 Merlin 1110696 rs6040355 A G,T 67 PASS NS=2;DP=10;AF=0.333,0.667;AA=T;DB GT:GQ:DP:HQ 1|2:21:6:23,27 2|1:2:0:18,2 2/2:35:4 | |
| 22 Merlin 1230237 . T . 47 PASS NS=3;DP=13;AA=T GT:GQ:DP:HQ 0|0:54:7:56,60 0|0:48:4:51,51 0/0:61:2 | |
| 23 Merlin 1234567 microsat1 GTCT G,GTACT 50 PASS NS=3;DP=9;AA=G GT:GQ:DP 0/1:35:4 0/2:17:2 1/1:40:3 |