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comparison readme.rst @ 18:836d1aa3e89a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 3c41f2c44dd5080cbdb5f6bb85dac2b564c8966e
author iuc
date Thu, 16 Nov 2017 09:44:45 -0500
parents 1a6d882d340d
children 1cfc579079a6
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17:ff11d442feed 18:836d1aa3e89a
5 JavaScript and HTML5 5 JavaScript and HTML5
6 6
7 Thus, it makes an ideal fit with Galaxy, especially for use as a 7 Thus, it makes an ideal fit with Galaxy, especially for use as a
8 workflow summary. E.g. annotate a genome, then visualise all of the 8 workflow summary. E.g. annotate a genome, then visualise all of the
9 associated datasets as an interactive HTML page. This tool MUST be whitelisted 9 associated datasets as an interactive HTML page. This tool MUST be whitelisted
10 (or ``sanitize_all_html=False``) to function correctly. 10 (or ``sanitize_all_html=False`` in galaxy.ini) to function correctly.
11 11
12 Installation 12 Installation
13 ============ 13 ============
14 14
15 It is recommended to install this wrapper via the Galaxy Tool Shed. 15 It is recommended to install this wrapper via the Galaxy Tool Shed.
16 16
17 Running Locally 17 Running Locally
18 =============== 18 ===============
19 19
20 The Galaxy tool interface writes out a yaml file which is then used to generate 20 The Galaxy tool interface writes out a xml file which is then used to generate
21 the visualizations. An example used during development/testing can be seen in 21 the visualizations. An example used during development/testing can be seen in
22 `test-data/*/test.xml`. The format is in no way rigorously defined and is 22 `test-data/*/test.xml`. The format is in no way rigorously defined and is
23 likely to change at any time! Beware. ;) 23 likely to change at any time! Beware. ;)
24 24
25 History 25 History
26 ======= 26 =======
27 27
28 - 0.7 Support for plugins (currently GC Content, Bookmarks, ComboTrackSelector),
29 track metadata
28 - 0.5.2 Support for CanvasFeatures options. 30 - 0.5.2 Support for CanvasFeatures options.
29 - 0.5.1 Support for contextual menus. Conda tests. 31 - 0.5.1 Support for contextual menus. Conda tests.
30 - 0.5 Update existing instances on disk. Index names. Support HTML tracks 32 - 0.5 Update existing instances on disk. Index names. Support HTML tracks
31 instead of Canvas. Support default tracks. General JBrowse optinos 33 instead of Canvas. Support default tracks. General JBrowse optinos
32 - 0.4 Support for dataset collections and customisation of tracks including 34 - 0.4 Support for dataset collections and customisation of tracks including