Mercurial > repos > iuc > jbrowse

comparison jbrowse.xml @ 41:8774b28235bb draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 8556ea066463f5e112b6ded2c1527011ab1e3b38"
author iuc
date Thu, 31 Dec 2020 16:00:42 +0000
parents 17359b808b01
children 6cd09d7b5f37
comparison
equal deleted inserted replaced
40:17359b808b01 41:8774b28235bb
1 <tool id="jbrowse" name="JBrowse" version="@TOOL_VERSION@+@WRAPPER_VERSION@"> 1 <tool id="jbrowse" name="JBrowse" version="@TOOL_VERSION@+@WRAPPER_VERSION@">
2 <description>genome browser</description> 2 <description>genome browser</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <xrefs>
7 <xref type="bio.tools">jbrowse</xref>
8 </xrefs>
6 <expand macro="requirements"/> 9 <expand macro="requirements"/>
10 <edam_operations>
11 <edam_operation>operation_0573</edam_operation>
12 <edam_operation>operation_0564</edam_operation>
13 </edam_operations>
14 <edam_topics>
15 <edam_topic>topic_3307</edam_topic>
16 <edam_topic>topic_0092</edam_topic>
17 </edam_topics>
7 <version_command>python '${__tool_directory__}/jbrowse.py' --version</version_command> 18 <version_command>python '${__tool_directory__}/jbrowse.py' --version</version_command>
8 <command detect_errors="aggressive"><![CDATA[ 19 <command detect_errors="aggressive"><![CDATA[
9 #if $action.action_select == "create": 20 #if $action.action_select == "create":
10 mkdir -p $output.files_path && 21 mkdir -p $output.files_path &&
11 #else: 22 #else:
665 <outputs> 676 <outputs>
666 <data format="html" name="output" label="JBrowse on $on_string - $standalone"/> 677 <data format="html" name="output" label="JBrowse on $on_string - $standalone"/>
667 </outputs> 678 </outputs>
668 <tests> 679 <tests>
669 <test> 680 <test>
670 <!-- gencode -->
671 <param name="reference_genome|genome_type_select" value="history"/> 681 <param name="reference_genome|genome_type_select" value="history"/>
672 <param name="reference_genome|genome" value="merlin.fa"/> 682 <param name="reference_genome|genome" value="merlin.fa"/>
673 <param name="gencode" value="1" /> 683 <param name="gencode" value="1" />
674 <param name="standalone" value="data" /> 684 <param name="standalone" value="data" />
675 <param name="uglyTestingHack" value="enabled" /> 685 <param name="uglyTestingHack" value="enabled" />