Mercurial > repos > iuc > jbrowse

comparison test-data/bed/test.xml @ 34:9de82b4963e6 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 0a26506563ff9b7fa683d3d0eaa16436c3560908"
author iuc
date Wed, 11 Sep 2019 09:40:36 -0400
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33:0ae74c70b267 34:9de82b4963e6
1 <?xml version="1.0"?>
2 <root>
3 <metadata>
4 <gencode>11</gencode>
5 <genomes>
6 <genome path="/tmp/tmpqkd9zdgq/files/2/3/a/dataset_23ae18d3-c882-4d06-a36e-5a061da14b2e.dat">
7 <metadata>
8 <dataset id="7b55dbb89df8f4e5" hid="1"
9 size="171.6 KB"
10 edam_format="format_1929"
11 file_ext="fasta" />
12 <history id="54f2a3a23292eb07"
13 user_email="test@bx.psu.edu"
14 user_id="2"
15 display_name="test_history"/>
16 <metadata
17 dbkey="?"
18 data_lines="2881"
19 sequences="1"
20 />
21 <tool
22 tool_id="upload1"
23 tool_version="1.1.6"
24 />
25 </metadata>
26 </genome>
27 </genomes>
28 <general>
29 <defaultLocation></defaultLocation>
30 <trackPadding>20</trackPadding>
31
32 <shareLink>true</shareLink>
33 <aboutDescription></aboutDescription>
34 <show_tracklist>true</show_tracklist>
35 <show_nav>true</show_nav>
36 <show_overview>true</show_overview>
37 <show_menu>true</show_menu>
38 <hideGenomeOptions>false</hideGenomeOptions>
39 </general>
40 <galaxyUrl>http://localhost</galaxyUrl>
41 </metadata>
42 <tracks>
43 <track cat="Default" format="gene_calls" visibility="default_off">
44 <files>
45 <trackFile path="/tmp/tmpqkd9zdgq/files/1/0/3/dataset_103bde9a-c404-441e-99fc-cfaeb674e4ef.dat" ext="bed" label="test-3.bed">
46 <metadata>
47 <dataset id="fa6d20d0fb68383f" hid="2"
48 size="49 bytes"
49 edam_format="format_3003"
50 file_ext="bed" />
51 <history id="54f2a3a23292eb07"
52 user_email="test@bx.psu.edu"
53 user_id="2"
54 display_name="test_history"/>
55 <metadata
56 dbkey="?"
57 data_lines="3"
58 columns="3"
59 delimiter="__tc__"
60 chromCol="1"
61 startCol="2"
62 endCol="3"
63 viz_filter_cols="[4]"
64 />
65 <tool
66 tool_id="upload1"
67 tool_version="1.1.6"
68 />
69 </metadata>
70 </trackFile>
71 <trackFile path="/tmp/tmpqkd9zdgq/files/d/e/1/dataset_de110c59-5762-4148-ba67-f3571280eae6.dat" ext="bed" label="test-6.bed">
72 <metadata>
73 <dataset id="683bc220e21425bb" hid="3"
74 size="180 bytes"
75 edam_format="format_3003"
76 file_ext="bed" />
77 <history id="54f2a3a23292eb07"
78 user_email="test@bx.psu.edu"
79 user_id="2"
80 display_name="test_history"/>
81 <metadata
82 dbkey="?"
83 data_lines="3"
84 columns="6"
85 delimiter="__tc__"
86 chromCol="1"
87 startCol="2"
88 endCol="3"
89 strandCol="6"
90 nameCol="4"
91 viz_filter_cols="[4]"
92 />
93 <tool
94 tool_id="upload1"
95 tool_version="1.1.6"
96 />
97 </metadata>
98 </trackFile>
99 </files>
100
101 <options>
102 <style>
103 <overridePlugins>False</overridePlugins>
104 <overrideDraggable>False</overrideDraggable>
105 <className>feature</className>
106 <description>note,description</description>
107 <label>product,name,id</label>
108 <height>10px</height>
109 <maxHeight>600</maxHeight>
110 </style>
111 <scaling>
112 <method>ignore</method>
113 <scheme>
114 <color>__auto__</color>
115 </scheme>
116 </scaling>
117 <menus>
118 </menus>
119 <custom_config>
120 </custom_config>
121
122 <gff>
123 <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType>
124 <index>false</index>
125 </gff>
126 </options>
127 </track>
128 </tracks>
129 <plugins
130 ComboTrackSelector=""
131 Bookmarks=""
132 GCContent=""
133 BlastView="True"
134 theme=""
135 />
136 </root>