Mercurial > repos > iuc > jbrowse

comparison test-data/menus/test.xml @ 34:9de82b4963e6 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 0a26506563ff9b7fa683d3d0eaa16436c3560908"
author iuc
date Wed, 11 Sep 2019 09:40:36 -0400
parents 2bb2e07a7a21
children
comparison
equal deleted inserted replaced
33:0ae74c70b267 34:9de82b4963e6
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <root> 2 <root>
3 <metadata> 3 <metadata>
4 <gencode>11</gencode> 4 <gencode>11</gencode>
5 <genomes> 5 <genomes>
6 <genome path="/tmp/tmpWtvfKr/files/000/dataset_14.dat"> 6 <genome path="/tmp/tmpqkd9zdgq/files/5/7/a/dataset_57af8674-e6c1-464b-9491-a7dade60d738.dat">
7 <metadata> 7 <metadata>
8 <dataset id="1ae74d26531588b0" hid="1" 8 <dataset id="61f03d5eef6f1538" hid="1"
9 size="171.6 KB" 9 size="171.6 KB"
10 edam_format="format_1929" 10 edam_format="format_1929"
11 file_ext="fasta" /> 11 file_ext="fasta" />
12 <history id="8155e4b4bf1581ff" 12 <history id="7b55dbb89df8f4e5"
13 user_email="test@bx.psu.edu" 13 user_email="test@bx.psu.edu"
14 user_id="2" 14 user_id="2"
15 display_name="test_history"/> 15 display_name="test_history"/>
16 <metadata 16 <metadata
17 dbkey="?" 17 dbkey="?"
40 <galaxyUrl>http://localhost</galaxyUrl> 40 <galaxyUrl>http://localhost</galaxyUrl>
41 </metadata> 41 </metadata>
42 <tracks> 42 <tracks>
43 <track cat="With menu or index" format="gene_calls" visibility="default_off"> 43 <track cat="With menu or index" format="gene_calls" visibility="default_off">
44 <files> 44 <files>
45 <trackFile path="/tmp/tmpWtvfKr/files/000/dataset_15.dat" ext="gff3" label="1.gff"> 45 <trackFile path="/tmp/tmpqkd9zdgq/files/b/c/d/dataset_bcd9d5b3-9f0f-4350-8628-f282f26cb8d4.dat" ext="gff3" label="1.gff">
46 <metadata> 46 <metadata>
47 <dataset id="440a6c2b5d9efe20" hid="2" 47 <dataset id="d5b3e51b7b790121" hid="2"
48 size="2.3 KB" 48 size="2.3 KB"
49 edam_format="format_1975" 49 edam_format="format_1975"
50 file_ext="gff3" /> 50 file_ext="gff3" />
51 <history id="8155e4b4bf1581ff" 51 <history id="7b55dbb89df8f4e5"
52 user_email="test@bx.psu.edu" 52 user_email="test@bx.psu.edu"
53 user_id="2" 53 user_id="2"
54 display_name="test_history"/> 54 display_name="test_history"/>
55 <metadata 55 <metadata
56 dbkey="?" 56 dbkey="?"
70 70
71 <options> 71 <options>
72 <style> 72 <style>
73 <overridePlugins>False</overridePlugins> 73 <overridePlugins>False</overridePlugins>
74 <overrideDraggable>False</overrideDraggable> 74 <overrideDraggable>False</overrideDraggable>
75 <className>feature2</className> 75 <className>feature</className>
76 <description>note,description</description> 76 <description>note,description</description>
77 <label>product,name,id</label> 77 <label>product,name,id</label>
78 <height>10px</height> 78 <height>10px</height>
79 <maxHeight>600</maxHeight> 79 <maxHeight>600</maxHeight>
80 </style> 80 </style>
103 <custom_config> 103 <custom_config>
104 </custom_config> 104 </custom_config>
105 105
106 <gff> 106 <gff>
107 <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType> 107 <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType>
108 <topLevelFeatures>mRNA</topLevelFeatures>
109 <index>false</index> 108 <index>false</index>
110 </gff> 109 </gff>
111 </options> 110 </options>
112 </track> 111 </track>
113 <track cat="With menu or index" format="gene_calls" visibility="default_off"> 112 <track cat="With menu or index" format="gene_calls" visibility="default_off">
114 <files> 113 <files>
115 <trackFile path="/tmp/tmpWtvfKr/files/000/dataset_15.dat" ext="gff3" label="1.gff"> 114 <trackFile path="/tmp/tmpqkd9zdgq/files/b/c/d/dataset_bcd9d5b3-9f0f-4350-8628-f282f26cb8d4.dat" ext="gff3" label="1.gff">
116 <metadata> 115 <metadata>
117 <dataset id="440a6c2b5d9efe20" hid="2" 116 <dataset id="d5b3e51b7b790121" hid="2"
118 size="2.3 KB" 117 size="2.3 KB"
119 edam_format="format_1975" 118 edam_format="format_1975"
120 file_ext="gff3" /> 119 file_ext="gff3" />
121 <history id="8155e4b4bf1581ff" 120 <history id="7b55dbb89df8f4e5"
122 user_email="test@bx.psu.edu" 121 user_email="test@bx.psu.edu"
123 user_id="2" 122 user_id="2"
124 display_name="test_history"/> 123 display_name="test_history"/>
125 <metadata 124 <metadata
126 dbkey="?" 125 dbkey="?"
140 139
141 <options> 140 <options>
142 <style> 141 <style>
143 <overridePlugins>False</overridePlugins> 142 <overridePlugins>False</overridePlugins>
144 <overrideDraggable>False</overrideDraggable> 143 <overrideDraggable>False</overrideDraggable>
145 <className>feature2</className> 144 <className>feature</className>
146 <description>note,description</description> 145 <description>note,description</description>
147 <label>product,name,id</label> 146 <label>product,name,id</label>
148 <height>10px</height> 147 <height>10px</height>
149 <maxHeight>600</maxHeight> 148 <maxHeight>600</maxHeight>
150 </style> 149 </style>
159 <custom_config> 158 <custom_config>
160 </custom_config> 159 </custom_config>
161 160
162 <gff> 161 <gff>
163 <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType> 162 <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType>
164 <topLevelFeatures>mRNA</topLevelFeatures>
165 <index>true</index> 163 <index>true</index>
166 </gff> 164 </gff>
167 </options> 165 </options>
168 </track> 166 </track>
169 </tracks> 167 </tracks>