Mercurial > repos > iuc > jbrowse

comparison macros.xml @ 5:ae9382cfb6ac draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 3bbca939ca8a3298a3a2d6450abb04a96851e1ed
author iuc
date Sat, 25 Jun 2016 15:06:43 -0400
parents 7342f467507b
children ecbdfc775b9a
comparison
equal deleted inserted replaced
4:d022577ff9cf 5:ae9382cfb6ac
46 <yield /> 46 <yield />
47 </when> 47 </when>
48 </conditional> 48 </conditional>
49 </xml> 49 </xml>
50 50
51 <xml name="track_display">
52 <param type="select" label="Track Visibility" name="track_visibility">
53 <option value="default_off">Off for new users</option>
54 <option value="default_on">On for new users</option>
55 <option value="force">Force On</option>
56 <option value="always">Always On (ignores URL parameters)</option>
57 </param>
58 </xml>
59
51 <xml name="jb_color" 60 <xml name="jb_color"
52 token_label="JBrowse style.color" 61 token_label="JBrowse style.color"
53 token_name="style_color" 62 token_name="style_color"
54 token_value="goldenrod" 63 token_value="goldenrod"
55 token_help="Basic color of features. Most glyphs interpret this as the fill color of the rectangle they draw. Color syntax is the same as that used for CSS" 64 token_help="Basic color of features. Most glyphs interpret this as the fill color of the rectangle they draw. Color syntax is the same as that used for CSS"
94 <option value="RdGy">RdGy: Red - Gray</option> 103 <option value="RdGy">RdGy: Red - Gray</option>
95 <option value="RdYlBu">RdYlBu: Red - Yellow - Blue</option> 104 <option value="RdYlBu">RdYlBu: Red - Yellow - Blue</option>
96 <option value="RdYlGn">RdYlBu: Red - Yellow - Green</option> 105 <option value="RdYlGn">RdYlBu: Red - Yellow - Green</option>
97 <option value="Spectral">Spectral</option> 106 <option value="Spectral">Spectral</option>
98 </param> 107 </param>
108 </xml>
109 <xml name="general_options">
110 <section name="jbgen" title="General JBrowse Options [Advanced]" expanded="false">
111 <param label="Default Location" type="text" name="defaultLocation" value="" help="Initial location to be shown for users who have never visited the browser before. Example: 'ctgA:1234..5678'"/>
112 <param label="Track Padding" type="integer" value="20" name="trackPadding" help="Spacing between tracks in the genome view, in pixels." />
113
114 <param label="Enable Share Link" name="shareLink" type="boolean" checked="true" truevalue="true" falsevalue="false" />
115 <param label="About the Browser" type="text" name="aboutDescription" value="" help="Description of the browser to be used in the 'About' popup" />
116
117 <param label="Show Track List" name="show_tracklist" type="boolean" checked="true" truevalue="true" falsevalue="false" help="Optionally hide the track list"/>
118 <param label="Show Navigation" name="show_nav" type="boolean" checked="true" truevalue="true" falsevalue="false" help="Optionally hide the navigation menu"/>
119 <param label="Show Overview" name="show_overview" type="boolean" checked="true" truevalue="true" falsevalue="false" help="Optionally hide the overview bar"/>
120 <param label="Show Menu" name="show_menu" type="boolean" checked="true" truevalue="true" falsevalue="false" help="Optionally hide the menu bar"/>
121
122 <param label="Hide Genome Options" name="hideGenomeOptions" type="boolean" truevalue="true" falsevalue="false" help="Hide options for opening a sequence file"/>
123 </section>
99 </xml> 124 </xml>
100 <xml name="color_selection_minmax"> 125 <xml name="color_selection_minmax">
101 <section name="jbcolor" title="JBrowse Color Options [Advanced]" expanded="false"> 126 <section name="jbcolor" title="JBrowse Color Options [Advanced]" expanded="false">
102 <!-- Abuse auto/manual for bicolor pivot. Means we'll have to handle the 127 <!-- Abuse auto/manual for bicolor pivot. Means we'll have to handle the
103 auto case as well, but may be safe to just say "brewer colors? Pff, 128 auto case as well, but may be safe to just say "brewer colors? Pff,