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comparison macros.xml @ 6:ecbdfc775b9a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit fe77b125826ab5cbd0a235f957d66e544b658a98
author iuc
date Sat, 25 Jun 2016 16:44:39 -0400
parents ae9382cfb6ac
children ad4b9d7eae6a
comparison
equal deleted inserted replaced
5:ae9382cfb6ac 6:ecbdfc775b9a
26 **Attribution** 26 **Attribution**
27 27
28 This Galaxy tool relies on the JBrowse, maintained by the GMOD Community. The Galaxy wrapper is developed by Eric Rasche 28 This Galaxy tool relies on the JBrowse, maintained by the GMOD Community. The Galaxy wrapper is developed by Eric Rasche
29 ]]> 29 ]]>
30 </token> 30 </token>
31
32 <xml name="genome_selector"
33 token_help=""
34 token_label="Fasta sequences"
35 token_optional="False" >
36 <conditional name="reference_genome">
37 <param help="Built-in references" label="Reference genome to display" name="genome_type_select" type="select">
38 <option selected="True" value="indexed">Use a built-in genome</option>
39 <option value="history">Use a genome from history</option>
40 </param>
41 <when value="indexed">
42 <param
43 help="@HELP@"
44 label="@LABEL@"
45 name="genomes"
46 type="select"
47 optional="@OPTIONAL@"
48 >
49 <options from_data_table="all_fasta">
50 <filter column="2" type="sort_by" />
51 <validator message="No genomes are available for the selected input dataset" type="no_options" />
52 </options>
53 </param>
54 </when>
55 <when value="history">
56 <param
57 format="fasta"
58 label="@LABEL@"
59 help="@HELP@"
60 name="genomes"
61 type="data"
62 optional="@OPTIONAL@"
63 multiple="True" />
64 </when>
65 </conditional>
66 </xml>
67
31 <xml name="auto_manual_tk" 68 <xml name="auto_manual_tk"
32 token_cond_label="Color" 69 token_cond_label="Color"
33 token_cond_name="color" 70 token_cond_name="color"
34 token_select_label="Color Specification" 71 token_select_label="Color Specification"
35 token_select_name="color_select" 72 token_select_name="color_select"
218 </conditional> 255 </conditional>
219 </section> 256 </section>
220 </xml> 257 </xml>
221 <xml name="track_styling" 258 <xml name="track_styling"
222 token_classname="feature" 259 token_classname="feature"
223 token_label="name,id" 260 token_label="prodcut,name,id"
224 token_description="note,description" 261 token_description="note"
225 token_height="100px"> 262 token_height="100px">
226 <section name="jbstyle" title="JBrowse Styling Options [Advanced]" expanded="false"> 263 <section name="jbstyle" title="JBrowse Styling Options [Advanced]" expanded="false">
227 <param label="JBrowse style.className" type="text" 264 <param label="JBrowse style.className" type="text"
228 name="style_classname" 265 name="style_classname"
229 value="@CLASSNAME@" 266 value="@CLASSNAME@"