Mercurial > repos > iuc > jbrowse

comparison jbrowse.xml @ 39:fd5dbf0f732e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 145eb8fdc1460af572d90991d048432f8e9582da"
author iuc
date Tue, 28 Apr 2020 10:01:04 -0400
parents 7ed0827da5a8
children 17359b808b01
comparison
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38:667e17248bfe 39:fd5dbf0f732e
79 <dataset id="${__app__.security.encode_id($reference_genome.genome.id)}" hid="${reference_genome.genome.hid}" 79 <dataset id="${__app__.security.encode_id($reference_genome.genome.id)}" hid="${reference_genome.genome.hid}"
80 size="${reference_genome.genome.get_size(nice_size=True)}" 80 size="${reference_genome.genome.get_size(nice_size=True)}"
81 edam_format="${reference_genome.genome.datatype.edam_format}" 81 edam_format="${reference_genome.genome.datatype.edam_format}"
82 file_ext="${reference_genome.genome.ext}" /> 82 file_ext="${reference_genome.genome.ext}" />
83 <history id="${__app__.security.encode_id($reference_genome.genome.history_id)}" 83 <history id="${__app__.security.encode_id($reference_genome.genome.history_id)}"
84 #if $reference_genome.genome.history.user:
84 user_email="${reference_genome.genome.history.user.email}" 85 user_email="${reference_genome.genome.history.user.email}"
85 user_id="${reference_genome.genome.history.user_id}" 86 user_id="${reference_genome.genome.history.user_id}"
86 display_name="${reference_genome.genome.history.get_display_name()}"/> 87 display_name="${reference_genome.genome.history.get_display_name()}"/>
88 #else
89 user_email="anonymous"
90 user_id="-1"
91 display_name="Unnamed History"/>
92 #end if
87 <metadata 93 <metadata
88 #for (key, value) in $reference_genome.genome.get_metadata().items(): 94 #for (key, value) in $reference_genome.genome.get_metadata().items():
89 #if "_types" not in $key: 95 #if "_types" not in $key:
90 ${key}="${value}" 96 ${key}="${value}"
91 #end if 97 #end if
125 <dataset id="${__app__.security.encode_id($dataset.id)}" hid="${dataset.hid}" 131 <dataset id="${__app__.security.encode_id($dataset.id)}" hid="${dataset.hid}"
126 size="${dataset.get_size(nice_size=True)}" 132 size="${dataset.get_size(nice_size=True)}"
127 edam_format="${dataset.datatype.edam_format}" 133 edam_format="${dataset.datatype.edam_format}"
128 file_ext="${dataset.ext}" /> 134 file_ext="${dataset.ext}" />
129 <history id="${__app__.security.encode_id($dataset.history_id)}" 135 <history id="${__app__.security.encode_id($dataset.history_id)}"
136 #if $dataset.history.user:
130 user_email="${dataset.history.user.email}" 137 user_email="${dataset.history.user.email}"
131 user_id="${dataset.history.user_id}" 138 user_id="${dataset.history.user_id}"
132 display_name="${dataset.history.get_display_name()}"/> 139 display_name="${dataset.history.get_display_name()}"/>
140 #else
141 user_email="anonymous"
142 user_id="-1"
143 display_name="Unnamed History"/>
144 #end if
133 <metadata 145 <metadata
134 #for (key, value) in $dataset.get_metadata().items(): 146 #for (key, value) in $dataset.get_metadata().items():
135 #if "_types" not in $key and $value is not None and len(str($value)) < 5000: 147 #if "_types" not in $key and $value is not None and len(str($value)) < 5000:
136 ${key}="${value}" 148 ${key}="${value}"
137 #end if 149 #end if