Mercurial > repos > iuc > jbrowse
diff test-data/endpoints/test.xml @ 25:1cfc579079a6 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit b6f9a87b6091cc881a49e0b6acfadc5e7786967f
| author | iuc |
|---|---|
| date | Tue, 29 Jan 2019 05:34:16 -0500 |
| parents | |
| children | 9de82b4963e6 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/endpoints/test.xml Tue Jan 29 05:34:16 2019 -0500 @@ -0,0 +1,106 @@ +<?xml version="1.0"?> +<root> + <metadata> + <gencode>11</gencode> + <genomes> + <genome path="/tmp/tmpdcb31B/files/000/dataset_24.dat"> + <metadata> + <dataset id="a1e670e1ea0da54b" hid="1" + size="171.6 KB" + edam_format="format_1929" + file_ext="fasta" /> + <history id="a90a30fafe298e1e" + user_email="test@bx.psu.edu" + user_id="2" + display_name="test_history"/> + <metadata + dbkey="?" + data_lines="2881" + sequences="1" + /> + <tool + tool_id="upload1" + tool_version="1.1.6" + /> + </metadata> + </genome> + </genomes> + <general> + <defaultLocation></defaultLocation> + <trackPadding>20</trackPadding> + + <shareLink>true</shareLink> + <aboutDescription></aboutDescription> + <show_tracklist>true</show_tracklist> + <show_nav>true</show_nav> + <show_overview>true</show_overview> + <show_menu>true</show_menu> + <hideGenomeOptions>false</hideGenomeOptions> + </general> + <galaxyUrl>http://localhost</galaxyUrl> + </metadata> + <tracks> + <track cat="External endpoints" format="rest" visibility="default_off"> + + <options> + <style> + <overridePlugins>False</overridePlugins> + <overrideDraggable>False</overrideDraggable> + <className>feature</className> + <description>Hit_titles</description> + <label>description</label> + <height>600px</height> + <maxHeight>600</maxHeight> + </style> + <scaling> + <method>ignore</method> + <scheme> + <color>__auto__</color> + </scheme> + </scaling> + <menus> + </menus> + + <label>Rest api</label> + <rest> + <url>http://example.org.external/rest_api/</url> + </rest> + </options> + </track> + <track cat="External endpoints" format="sparql" visibility="default_off"> + + <options> + <style> + <overridePlugins>False</overridePlugins> + <overrideDraggable>False</overrideDraggable> + <className>feature</className> + <description>Hit_titles</description> + <label>description</label> + <height>600px</height> + <maxHeight>600</maxHeight> + </style> + <scaling> + <method>ignore</method> + <scheme> + <color>__auto__</color> + </scheme> + </scaling> + <menus> + </menus> + + <label>Sparql endpoint</label> + <sparql> + <url>http://example.org.external/sparql/</url> + <query> DEFINE sql:select-option 'order' prefix rdf: __lt__http://www.w3.org/1999/02/22-rdf-syntax-ns#__gt__ select ?start, ?end, IF( ?faldo_type = faldo:ForwardStrandPosition, 1, IF( ?faldo_type = faldo:ReverseStrandPosition, -1, 0 ) ) as ?strand, str(?obj_type_name) as ?type, str(?label) as ?name, str(?obj_name) as ?description, ?obj as ?uniqueID, ?parent as ?parentUniqueID where { values ?faldo_type { faldo:ForwardStrandPosition faldo:ReverseStrandPosition faldo:BothStrandsPosition } }</query> + </sparql> + </options> + </track> + </tracks> + <plugins + ComboTrackSelector="" + Bookmarks="" + GCContent="" + BlastView="True" + theme="" + /> +</root>