Mercurial > repos > iuc > jbrowse
diff test-data/custom_config/test.xml @ 31:2bb2e07a7a21 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 12dff0abf006f6c81f6462cdf4ea9c0c740d1e9c
author | iuc |
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date | Mon, 15 Apr 2019 10:31:26 -0400 |
parents | |
children | 9de82b4963e6 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/custom_config/test.xml Mon Apr 15 10:31:26 2019 -0400 @@ -0,0 +1,119 @@ +<?xml version="1.0"?> +<root> + <metadata> + <gencode>11</gencode> + <genomes> + <genome path="/tmp/tmpWtvfKr/files/000/dataset_17.dat"> + <metadata> + <dataset id="27ee89e2e3d631e0" hid="1" + size="171.6 KB" + edam_format="format_1929" + file_ext="fasta" /> + <history id="7b55dbb89df8f4e5" + user_email="test@bx.psu.edu" + user_id="2" + display_name="test_history"/> + <metadata + dbkey="?" + data_lines="2881" + sequences="1" + /> + <tool + tool_id="upload1" + tool_version="1.1.6" + /> + </metadata> + </genome> + </genomes> + <general> + <defaultLocation></defaultLocation> + <trackPadding>20</trackPadding> + + <shareLink>true</shareLink> + <aboutDescription></aboutDescription> + <show_tracklist>true</show_tracklist> + <show_nav>true</show_nav> + <show_overview>true</show_overview> + <show_menu>true</show_menu> + <hideGenomeOptions>false</hideGenomeOptions> + </general> + <galaxyUrl>http://localhost</galaxyUrl> + </metadata> + <tracks> + <track cat="With custom track config" format="gene_calls" visibility="default_off"> + <files> + <trackFile path="/tmp/tmpWtvfKr/files/000/dataset_18.dat" ext="gff3" label="1.gff"> + <metadata> + <dataset id="61f03d5eef6f1538" hid="2" + size="2.3 KB" + edam_format="format_1975" + file_ext="gff3" /> + <history id="7b55dbb89df8f4e5" + user_email="test@bx.psu.edu" + user_id="2" + display_name="test_history"/> + <metadata + dbkey="?" + data_lines="27" + comment_lines="19" + columns="9" + delimiter="__tc__" + attributes="6" + /> + <tool + tool_id="upload1" + tool_version="1.1.6" + /> + </metadata> + </trackFile> + </files> + + <options> + <style> + <overridePlugins>False</overridePlugins> + <overrideDraggable>False</overrideDraggable> + <className>feature2</className> + <description>note,description</description> + <label>product,name,id</label> + <height>10px</height> + <maxHeight>600</maxHeight> + </style> + <scaling> + <method>ignore</method> + <scheme> + <color>__auto__</color> + </scheme> + </scaling> + <menus> + </menus> + <custom_config> + <displayMode> + <text>collapsed</text> + </displayMode> + <histograms.height> + <integer>150</integer> + </histograms.height> + <maxFeatureScreenDensity> + <float>0.1</float> + </maxFeatureScreenDensity> + <style.strandArrow> + <boolean>false</boolean> + </style.strandArrow> + </custom_config> + + <gff> + <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType> + <topLevelFeatures>mRNA</topLevelFeatures> + <index>false</index> + </gff> + </options> + </track> + </tracks> + <plugins + ComboTrackSelector="" + Bookmarks="" + GCContent="" + BlastView="True" + theme="" + /> +</root>