diff test-data/custom_config/test.xml @ 31:2bb2e07a7a21 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 12dff0abf006f6c81f6462cdf4ea9c0c740d1e9c
author iuc
date Mon, 15 Apr 2019 10:31:26 -0400
parents
children 9de82b4963e6
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/custom_config/test.xml	Mon Apr 15 10:31:26 2019 -0400
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+<?xml version="1.0"?>
+<root>
+    <metadata>
+        <gencode>11</gencode>
+        <genomes>
+              <genome path="/tmp/tmpWtvfKr/files/000/dataset_17.dat">
+                <metadata>
+                  <dataset id="27ee89e2e3d631e0" hid="1"
+                      size="171.6 KB"
+                      edam_format="format_1929"
+                      file_ext="fasta" />
+                  <history id="7b55dbb89df8f4e5"
+                      user_email="test@bx.psu.edu"
+                      user_id="2"
+                      display_name="test_history"/>
+                  <metadata
+                      dbkey="?"
+                      data_lines="2881"
+                      sequences="1"
+                      />
+                  <tool
+                      tool_id="upload1"
+                      tool_version="1.1.6"
+                      />
+                </metadata>
+              </genome>
+        </genomes>
+        <general>
+            <defaultLocation></defaultLocation>
+            <trackPadding>20</trackPadding>
+
+            <shareLink>true</shareLink>
+            <aboutDescription></aboutDescription>
+            <show_tracklist>true</show_tracklist>
+            <show_nav>true</show_nav>
+            <show_overview>true</show_overview>
+            <show_menu>true</show_menu>
+            <hideGenomeOptions>false</hideGenomeOptions>
+        </general>
+        <galaxyUrl>http://localhost</galaxyUrl>
+    </metadata>
+    <tracks>
+        <track cat="With custom track config" format="gene_calls" visibility="default_off">
+            <files>
+              <trackFile path="/tmp/tmpWtvfKr/files/000/dataset_18.dat" ext="gff3" label="1.gff">
+                <metadata>
+                  <dataset id="61f03d5eef6f1538" hid="2"
+                      size="2.3 KB"
+                      edam_format="format_1975"
+                      file_ext="gff3" />
+                  <history id="7b55dbb89df8f4e5"
+                      user_email="test@bx.psu.edu"
+                      user_id="2"
+                      display_name="test_history"/>
+                  <metadata
+                      dbkey="?"
+                      data_lines="27"
+                      comment_lines="19"
+                      columns="9"
+                      delimiter="__tc__"
+                      attributes="6"
+                      />
+                  <tool
+                      tool_id="upload1"
+                      tool_version="1.1.6"
+                      />
+                </metadata>
+              </trackFile>
+            </files>
+
+            <options>
+                <style>
+                    <overridePlugins>False</overridePlugins>
+                    <overrideDraggable>False</overrideDraggable>
+                    <className>feature2</className>
+                    <description>note,description</description>
+                    <label>product,name,id</label>
+                    <height>10px</height>
+                    <maxHeight>600</maxHeight>
+                </style>
+                <scaling>
+                        <method>ignore</method>
+                        <scheme>
+                            <color>__auto__</color>
+                        </scheme>
+                </scaling>
+                <menus>
+                </menus>
+                <custom_config>
+                  <displayMode>
+                    <text>collapsed</text>
+                  </displayMode>
+                  <histograms.height>
+                    <integer>150</integer>
+                  </histograms.height>
+                  <maxFeatureScreenDensity>
+                    <float>0.1</float>
+                  </maxFeatureScreenDensity>
+                  <style.strandArrow>
+                    <boolean>false</boolean>
+                  </style.strandArrow>
+                </custom_config>
+
+                <gff>
+                    <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType>
+                    <topLevelFeatures>mRNA</topLevelFeatures>
+                    <index>false</index>
+                </gff>
+            </options>
+        </track>
+    </tracks>
+    <plugins
+        ComboTrackSelector=""
+        Bookmarks=""
+        GCContent=""
+        BlastView="True"
+        theme=""
+        />
+</root>