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diff test-data/bam/test.xml @ 3:7342f467507b draft

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Uploaded v0.4 of JBrowse
author iuc
date Thu, 31 Dec 2015 13:58:43 -0500
parents
children ff11d442feed
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/bam/test.xml	Thu Dec 31 13:58:43 2015 -0500
@@ -0,0 +1,37 @@
+<?xml version="1.0"?>
+<root>
+    <metadata>
+        <gencode>11</gencode>
+        <genomes>
+            <genome>test-data/merlin.fa</genome>
+        </genomes>
+    </metadata>
+    <tracks>
+        <track cat="Default" format="pileup">
+            <files>
+                <trackFile path="test-data/bam/154.bam" ext="bam" label="Basic"/>
+            </files>
+            <options>
+                <pileup>
+                    <auto_snp>false</auto_snp>
+                    <bam_indices>
+                        <bam_index>test-data/bam/154.bam.bai</bam_index>
+                    </bam_indices>
+                </pileup>
+            </options>
+        </track>
+        <track cat="Default" format="pileup">
+            <files>
+                <trackFile path="test-data/bam/154.bam" ext="bam" label="Auto-SNP"/>
+            </files>
+            <options>
+                <pileup>
+                    <auto_snp>true</auto_snp>
+                    <bam_indices>
+                        <bam_index>test-data/bam/154.bam.bai</bam_index>
+                    </bam_indices>
+                </pileup>
+            </options>
+        </track>
+    </tracks>
+</root>