diff test-data/gff3/D.gff @ 3:7342f467507b draft

Uploaded v0.4 of JBrowse
author iuc
date Thu, 31 Dec 2015 13:58:43 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gff3/D.gff	Thu Dec 31 13:58:43 2015 -0500
@@ -0,0 +1,46 @@
+##gff-version 3
+##sequence-region Merlin 1 172788
+Merlin	GeneMark.hmm	gene	10	30	.	+	.	ID=Merlin_1;seqid=Merlin
+Merlin	GeneMark.hmm	mRNA	14	30	.	+	.	ID=Merlin_1_mRNA;Parent=Merlin_1
+Merlin	GeneMark.hmm	CDS	14	20	1000	+	0	ID=Merlin_1_CDS ;Parent=Merlin_1_mRNA
+Merlin	GeneMark.hmm	CDS	24	30	500	+	0	ID=Merlin_1_CDS ;Parent=Merlin_1_mRNA
+
+Merlin	GeneMark.hmm	gene	14	30	.	+	.	ID=Merlin_2;seqid=Merlin;color=#00ff00
+Merlin	GeneMark.hmm	mRNA	14	30	.	+	.	ID=Merlin_2_mRNA;seqid=Merlin;color=#00ff00;Parent=Merlin_2
+Merlin	GeneMark.hmm	CDS	14	20	500	+	0	ID=Merlin_2_CDS ;Parent=Merlin_2_mRNA;color=#0000ff
+Merlin	GeneMark.hmm	CDS	24	30	750	+	0	ID=Merlin_2_CDS ;Parent=Merlin_2_mRNA;color=#00ff00
+
+Merlin	GeneMark.hmm	gene	10	30	.	+	.	ID=Merlin_3;seqid=Merlin
+Merlin	GeneMark.hmm	mRNA	14	30	.	+	.	ID=Merlin_3A_mRNA;Parent=Merlin_3;color=#0000ff
+Merlin	GeneMark.hmm	CDS	14	18	1000	+	0	ID=Merlin_3A_CDS ;Parent=Merlin_3A_mRNA;color=#0000ff
+Merlin	GeneMark.hmm	CDS	20	30	800	+	0	ID=Merlin_3A_CDS ;Parent=Merlin_3A_mRNA;color=#0000ff
+Merlin	GeneMark.hmm	mRNA	14	30	.	+	.	ID=Merlin_3B_mRNA;Parent=Merlin_3;color=#0000ff
+Merlin	GeneMark.hmm	CDS	14	22	400	+	0	ID=Merlin_3B_CDS ;Parent=Merlin_3B_mRNA;color=#0000ff
+Merlin	GeneMark.hmm	CDS	24	30	1000	+	0	ID=Merlin_3B_CDS ;Parent=Merlin_3B_mRNA;color=#0000ff
+
+
+
+Merlin	exonerate	gene	1740	2300	.	+	.	Name=Apple3;Note=Gene with two splicing models;ID=1
+Merlin	exonerate	mRNA	1740	2300	.	+	.	Name=Apple3-a;Note=mRNA A with both CDSs and UTRs;ID=1A;Parent=1;
+Merlin	exonerate	UTR	1740	1799	.	+	.	Parent=1A
+Merlin	exonerate	CDS	1900	2080	.	+	0	Parent=1A
+Merlin	exonerate	CDS	2100	2120	.	+	2	Parent=1A
+Merlin	exonerate	UTR	2120	2300	.	+	.	Parent=1A
+Merlin	exonerate	mRNA	1740	2300	.	+	.	Name=Apple3-b;Note=mRNA B with both CDSs and UTRs;ID=1B;Parent=1;
+Merlin	exonerate	UTR	1740	1799	.	+	.	Parent=1B
+Merlin	exonerate	CDS	1800	1880	.	+	0	Parent=1B
+Merlin	exonerate	CDS	1900	1950	.	+	1	Parent=1B
+Merlin	exonerate	CDS	2100	2120	.	+	2	Parent=1B
+Merlin	exonerate	UTR	2120	2300	.	+	.	Parent=1B
+
+
+
+#    {
+#    "baseUrl": "http://localhost:8000/out/data/"
+#    "compress": 0,
+#    "label": "Transcript",
+#    "storeClass": "JBrowse/Store/SeqFeature/NCList",
+#    "trackType": "JBrowse/View/Track/CanvasFeatures",
+#    "type": "JBrowse/View/Track/CanvasFeatures",
+#    "urlTemplate": "tracks/42ff9cb16c0509f0abb4a76ce14077bc_0/{refseq}/trackData.json",
+#    }