Mercurial > repos > iuc > jbrowse
diff test-data/gff3/test.xml @ 34:9de82b4963e6 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 0a26506563ff9b7fa683d3d0eaa16436c3560908"
| author | iuc |
|---|---|
| date | Wed, 11 Sep 2019 09:40:36 -0400 |
| parents | 2bb2e07a7a21 |
| children |
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--- a/test-data/gff3/test.xml Fri Aug 30 03:36:39 2019 -0400 +++ b/test-data/gff3/test.xml Wed Sep 11 09:40:36 2019 -0400 @@ -3,13 +3,13 @@ <metadata> <gencode>11</gencode> <genomes> - <genome path="/tmp/tmpTx5wXw/files/000/dataset_5.dat"> + <genome path="/tmp/tmpqkd9zdgq/files/b/f/a/dataset_bfad32fe-cc05-405c-965c-6fe9b7a36908.dat"> <metadata> - <dataset id="7b55dbb89df8f4e5" hid="1" + <dataset id="b842d972534ccb3e" hid="1" size="171.6 KB" edam_format="format_1929" file_ext="fasta" /> - <history id="54f2a3a23292eb07" + <history id="8155e4b4bf1581ff" user_email="test@bx.psu.edu" user_id="2" display_name="test_history"/> @@ -42,13 +42,13 @@ <tracks> <track cat="Auto Coloured" format="gene_calls" visibility="default_off"> <files> - <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_6.dat" ext="gff3" label="gff3/A.gff"> + <trackFile path="/tmp/tmpqkd9zdgq/files/7/6/2/dataset_7625da24-6a53-41c2-a7fc-c5c9719deccc.dat" ext="gff3" label="A.gff"> <metadata> - <dataset id="fa6d20d0fb68383f" hid="2" + <dataset id="5449172d6ff5669b" hid="2" size="2.3 KB" edam_format="format_1975" file_ext="gff3" /> - <history id="54f2a3a23292eb07" + <history id="8155e4b4bf1581ff" user_email="test@bx.psu.edu" user_id="2" display_name="test_history"/> @@ -66,13 +66,13 @@ /> </metadata> </trackFile> - <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_7.dat" ext="gff3" label="gff3/B.gff"> + <trackFile path="/tmp/tmpqkd9zdgq/files/c/f/c/dataset_cfcde690-dc99-4152-87ef-0936eb90f2ca.dat" ext="gff3" label="B.gff"> <metadata> - <dataset id="683bc220e21425bb" hid="3" + <dataset id="9ce08b2254e4d5ed" hid="3" size="2.3 KB" edam_format="format_1975" file_ext="gff3" /> - <history id="54f2a3a23292eb07" + <history id="8155e4b4bf1581ff" user_email="test@bx.psu.edu" user_id="2" display_name="test_history"/> @@ -90,13 +90,13 @@ /> </metadata> </trackFile> - <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_8.dat" ext="gff3" label="gff3/C.gff"> + <trackFile path="/tmp/tmpqkd9zdgq/files/1/c/4/dataset_1c41cecd-9fc6-47b5-9f0b-b7bb73498675.dat" ext="gff3" label="C.gff"> <metadata> - <dataset id="a90a30fafe298e1e" hid="4" + <dataset id="80b8022ff3f677b7" hid="4" size="2.3 KB" edam_format="format_1975" file_ext="gff3" /> - <history id="54f2a3a23292eb07" + <history id="8155e4b4bf1581ff" user_email="test@bx.psu.edu" user_id="2" display_name="test_history"/> @@ -114,13 +114,13 @@ /> </metadata> </trackFile> - <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_9.dat" ext="gff3" label="gff3/D.gff"> + <trackFile path="/tmp/tmpqkd9zdgq/files/5/b/3/dataset_5b33c8ff-b12b-4307-a35c-92ea8571dc04.dat" ext="gff3" label="D.gff"> <metadata> - <dataset id="b842d972534ccb3e" hid="5" + <dataset id="b54fb481e575bccc" hid="5" size="2.3 KB" edam_format="format_1975" file_ext="gff3" /> - <history id="54f2a3a23292eb07" + <history id="8155e4b4bf1581ff" user_email="test@bx.psu.edu" user_id="2" display_name="test_history"/> @@ -163,20 +163,19 @@ <gff> <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType> - <topLevelFeatures>mRNA</topLevelFeatures> <index>false</index> </gff> </options> </track> <track cat="Ignore Scale" format="gene_calls" visibility="default_off"> <files> - <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_10.dat" ext="gff3" label="gff3/1.gff"> + <trackFile path="/tmp/tmpqkd9zdgq/files/2/d/4/dataset_2d49732b-93ef-4018-971f-5a3b92e9ecd0.dat" ext="gff3" label="1.gff"> <metadata> - <dataset id="5449172d6ff5669b" hid="6" + <dataset id="1ae74d26531588b0" hid="6" size="2.3 KB" edam_format="format_1975" file_ext="gff3" /> - <history id="54f2a3a23292eb07" + <history id="8155e4b4bf1581ff" user_email="test@bx.psu.edu" user_id="2" display_name="test_history"/> @@ -219,20 +218,19 @@ <gff> <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType> - <topLevelFeatures>mRNA</topLevelFeatures> <index>false</index> </gff> </options> </track> <track cat="Scaled Colour" format="gene_calls" visibility="default_off"> <files> - <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_10.dat" ext="gff3" label="gff3/1.gff"> + <trackFile path="/tmp/tmpqkd9zdgq/files/2/d/4/dataset_2d49732b-93ef-4018-971f-5a3b92e9ecd0.dat" ext="gff3" label="1.gff"> <metadata> - <dataset id="5449172d6ff5669b" hid="6" + <dataset id="1ae74d26531588b0" hid="6" size="2.3 KB" edam_format="format_1975" file_ext="gff3" /> - <history id="54f2a3a23292eb07" + <history id="8155e4b4bf1581ff" user_email="test@bx.psu.edu" user_id="2" display_name="test_history"/> @@ -281,20 +279,19 @@ <gff> <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType> - <topLevelFeatures>mRNA</topLevelFeatures> <index>false</index> </gff> </options> </track> <track cat="Scaled Colour" format="gene_calls" visibility="default_off"> <files> - <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_10.dat" ext="gff3" label="gff3/1.gff"> + <trackFile path="/tmp/tmpqkd9zdgq/files/2/d/4/dataset_2d49732b-93ef-4018-971f-5a3b92e9ecd0.dat" ext="gff3" label="1.gff"> <metadata> - <dataset id="5449172d6ff5669b" hid="6" + <dataset id="1ae74d26531588b0" hid="6" size="2.3 KB" edam_format="format_1975" file_ext="gff3" /> - <history id="54f2a3a23292eb07" + <history id="8155e4b4bf1581ff" user_email="test@bx.psu.edu" user_id="2" display_name="test_history"/> @@ -343,20 +340,19 @@ <gff> <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType> - <topLevelFeatures>mRNA</topLevelFeatures> <index>false</index> </gff> </options> </track> <track cat="Scaled Colour" format="gene_calls" visibility="default_off"> <files> - <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_10.dat" ext="gff3" label="gff3/1.gff"> + <trackFile path="/tmp/tmpqkd9zdgq/files/2/d/4/dataset_2d49732b-93ef-4018-971f-5a3b92e9ecd0.dat" ext="gff3" label="1.gff"> <metadata> - <dataset id="5449172d6ff5669b" hid="6" + <dataset id="1ae74d26531588b0" hid="6" size="2.3 KB" edam_format="format_1975" file_ext="gff3" /> - <history id="54f2a3a23292eb07" + <history id="8155e4b4bf1581ff" user_email="test@bx.psu.edu" user_id="2" display_name="test_history"/> @@ -407,20 +403,19 @@ <gff> <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType> - <topLevelFeatures>mRNA</topLevelFeatures> <index>false</index> </gff> </options> </track> <track cat="Scaled Colour" format="gene_calls" visibility="default_off"> <files> - <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_10.dat" ext="gff3" label="gff3/1.gff"> + <trackFile path="/tmp/tmpqkd9zdgq/files/2/d/4/dataset_2d49732b-93ef-4018-971f-5a3b92e9ecd0.dat" ext="gff3" label="1.gff"> <metadata> - <dataset id="5449172d6ff5669b" hid="6" + <dataset id="1ae74d26531588b0" hid="6" size="2.3 KB" edam_format="format_1975" file_ext="gff3" /> - <history id="54f2a3a23292eb07" + <history id="8155e4b4bf1581ff" user_email="test@bx.psu.edu" user_id="2" display_name="test_history"/> @@ -471,20 +466,19 @@ <gff> <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType> - <topLevelFeatures>mRNA</topLevelFeatures> <index>false</index> </gff> </options> </track> <track cat="Realistic" format="gene_calls" visibility="default_off"> <files> - <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_11.dat" ext="gff3" label="gff3/interpro.gff"> + <trackFile path="/tmp/tmpqkd9zdgq/files/0/3/0/dataset_030f551a-fd97-470e-ab58-328d8108783d.dat" ext="gff3" label="interpro.gff"> <metadata> - <dataset id="9ce08b2254e4d5ed" hid="7" + <dataset id="440a6c2b5d9efe20" hid="7" size="103.3 KB" edam_format="format_1975" file_ext="gff3" /> - <history id="54f2a3a23292eb07" + <history id="8155e4b4bf1581ff" user_email="test@bx.psu.edu" user_id="2" display_name="test_history"/> @@ -527,20 +521,19 @@ <gff> <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType> - <topLevelFeatures>mRNA</topLevelFeatures> <index>false</index> </gff> </options> </track> <track cat="Realistic" format="gene_calls" visibility="default_off"> <files> - <trackFile path="/tmp/tmpTx5wXw/files/000/dataset_12.dat" ext="gff3" label="gff3/2.gff"> + <trackFile path="/tmp/tmpqkd9zdgq/files/a/b/b/dataset_abb36b76-2a3a-4353-919e-13c94629303f.dat" ext="gff3" label="2.gff"> <metadata> - <dataset id="80b8022ff3f677b7" hid="8" + <dataset id="ea0b941dfbe636f8" hid="8" size="326 bytes" edam_format="format_1975" file_ext="gff3" /> - <history id="54f2a3a23292eb07" + <history id="8155e4b4bf1581ff" user_email="test@bx.psu.edu" user_id="2" display_name="test_history"/> @@ -583,7 +576,6 @@ <gff> <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType> - <topLevelFeatures>mRNA</topLevelFeatures> <match>cDNA_match</match> <index>false</index> </gff>