view test-data/gff3/B.gff @ 14:18be2d72fdee draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 0bfb0de98c918860c21808e8832caad9f0535975
author iuc
date Thu, 08 Jun 2017 17:31:38 -0400
parents 7342f467507b
children
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##gff-version 3
##sequence-region Merlin 1 172788
Merlin	GeneMark.hmm	gene	10	30	.	+	.	ID=Merlin_1;seqid=Merlin
Merlin	GeneMark.hmm	mRNA	14	30	.	+	.	ID=Merlin_1_mRNA;Parent=Merlin_1
Merlin	GeneMark.hmm	CDS	14	20	1000	+	0	ID=Merlin_1_CDS ;Parent=Merlin_1_mRNA
Merlin	GeneMark.hmm	CDS	24	30	500	+	0	ID=Merlin_1_CDS ;Parent=Merlin_1_mRNA

Merlin	GeneMark.hmm	gene	14	30	.	+	.	ID=Merlin_2;seqid=Merlin;color=#00ff00
Merlin	GeneMark.hmm	mRNA	14	30	.	+	.	ID=Merlin_2_mRNA;seqid=Merlin;color=#00ff00;Parent=Merlin_2
Merlin	GeneMark.hmm	CDS	14	20	500	+	0	ID=Merlin_2_CDS ;Parent=Merlin_2_mRNA;color=#0000ff
Merlin	GeneMark.hmm	CDS	24	30	750	+	0	ID=Merlin_2_CDS ;Parent=Merlin_2_mRNA;color=#00ff00

Merlin	GeneMark.hmm	gene	10	30	.	+	.	ID=Merlin_3;seqid=Merlin
Merlin	GeneMark.hmm	mRNA	14	30	.	+	.	ID=Merlin_3A_mRNA;Parent=Merlin_3;color=#0000ff
Merlin	GeneMark.hmm	CDS	14	18	1000	+	0	ID=Merlin_3A_CDS ;Parent=Merlin_3A_mRNA;color=#0000ff
Merlin	GeneMark.hmm	CDS	20	30	800	+	0	ID=Merlin_3A_CDS ;Parent=Merlin_3A_mRNA;color=#0000ff
Merlin	GeneMark.hmm	mRNA	14	30	.	+	.	ID=Merlin_3B_mRNA;Parent=Merlin_3;color=#0000ff
Merlin	GeneMark.hmm	CDS	14	22	400	+	0	ID=Merlin_3B_CDS ;Parent=Merlin_3B_mRNA;color=#0000ff
Merlin	GeneMark.hmm	CDS	24	30	1000	+	0	ID=Merlin_3B_CDS ;Parent=Merlin_3B_mRNA;color=#0000ff



Merlin	exonerate	gene	1740	2300	.	+	.	Name=Apple3;Note=Gene with two splicing models;ID=1
Merlin	exonerate	mRNA	1740	2300	.	+	.	Name=Apple3-a;Note=mRNA A with both CDSs and UTRs;ID=1A;Parent=1;
Merlin	exonerate	UTR	1740	1799	.	+	.	Parent=1A
Merlin	exonerate	CDS	1900	2080	.	+	0	Parent=1A
Merlin	exonerate	CDS	2100	2120	.	+	2	Parent=1A
Merlin	exonerate	UTR	2120	2300	.	+	.	Parent=1A
Merlin	exonerate	mRNA	1740	2300	.	+	.	Name=Apple3-b;Note=mRNA B with both CDSs and UTRs;ID=1B;Parent=1;
Merlin	exonerate	UTR	1740	1799	.	+	.	Parent=1B
Merlin	exonerate	CDS	1800	1880	.	+	0	Parent=1B
Merlin	exonerate	CDS	1900	1950	.	+	1	Parent=1B
Merlin	exonerate	CDS	2100	2120	.	+	2	Parent=1B
Merlin	exonerate	UTR	2120	2300	.	+	.	Parent=1B



#    {
#    "baseUrl": "http://localhost:8000/out/data/"
#    "compress": 0,
#    "label": "Transcript",
#    "storeClass": "JBrowse/Store/SeqFeature/NCList",
#    "trackType": "JBrowse/View/Track/CanvasFeatures",
#    "type": "JBrowse/View/Track/CanvasFeatures",
#    "urlTemplate": "tracks/42ff9cb16c0509f0abb4a76ce14077bc_0/{refseq}/trackData.json",
#    }