Mercurial > repos > iuc > jbrowse

view test-data/gff3/test.xml @ 35:3235aeb45c22 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 22ed9cb1e65cff5239df7ad4c76eaf0e981cf279"
author iuc
date Wed, 18 Dec 2019 10:46:52 -0500
parents 9de82b4963e6
children
line wrap: on
line source

<?xml version="1.0"?>
<root>
    <metadata>
        <gencode>11</gencode>
        <genomes>
              <genome path="/tmp/tmpqkd9zdgq/files/b/f/a/dataset_bfad32fe-cc05-405c-965c-6fe9b7a36908.dat">
                <metadata>
                  <dataset id="b842d972534ccb3e" hid="1"
                      size="171.6 KB"
                      edam_format="format_1929"
                      file_ext="fasta" />
                  <history id="8155e4b4bf1581ff"
                      user_email="test@bx.psu.edu"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="?"
                      data_lines="2881"
                      sequences="1"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </genome>
        </genomes>
        <general>
            <defaultLocation></defaultLocation>
            <trackPadding>20</trackPadding>

            <shareLink>true</shareLink>
            <aboutDescription></aboutDescription>
            <show_tracklist>true</show_tracklist>
            <show_nav>true</show_nav>
            <show_overview>true</show_overview>
            <show_menu>true</show_menu>
            <hideGenomeOptions>false</hideGenomeOptions>
        </general>
        <galaxyUrl>http://localhost</galaxyUrl>
    </metadata>
    <tracks>
        <track cat="Auto Coloured" format="gene_calls" visibility="default_off">
            <files>
              <trackFile path="/tmp/tmpqkd9zdgq/files/7/6/2/dataset_7625da24-6a53-41c2-a7fc-c5c9719deccc.dat" ext="gff3" label="A.gff">
                <metadata>
                  <dataset id="5449172d6ff5669b" hid="2"
                      size="2.3 KB"
                      edam_format="format_1975"
                      file_ext="gff3" />
                  <history id="8155e4b4bf1581ff"
                      user_email="test@bx.psu.edu"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="?"
                      data_lines="27"
                      comment_lines="19"
                      columns="9"
                      delimiter="__tc__"
                      attributes="6"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </trackFile>
              <trackFile path="/tmp/tmpqkd9zdgq/files/c/f/c/dataset_cfcde690-dc99-4152-87ef-0936eb90f2ca.dat" ext="gff3" label="B.gff">
                <metadata>
                  <dataset id="9ce08b2254e4d5ed" hid="3"
                      size="2.3 KB"
                      edam_format="format_1975"
                      file_ext="gff3" />
                  <history id="8155e4b4bf1581ff"
                      user_email="test@bx.psu.edu"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="?"
                      data_lines="27"
                      comment_lines="19"
                      columns="9"
                      delimiter="__tc__"
                      attributes="6"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </trackFile>
              <trackFile path="/tmp/tmpqkd9zdgq/files/1/c/4/dataset_1c41cecd-9fc6-47b5-9f0b-b7bb73498675.dat" ext="gff3" label="C.gff">
                <metadata>
                  <dataset id="80b8022ff3f677b7" hid="4"
                      size="2.3 KB"
                      edam_format="format_1975"
                      file_ext="gff3" />
                  <history id="8155e4b4bf1581ff"
                      user_email="test@bx.psu.edu"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="?"
                      data_lines="27"
                      comment_lines="19"
                      columns="9"
                      delimiter="__tc__"
                      attributes="6"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </trackFile>
              <trackFile path="/tmp/tmpqkd9zdgq/files/5/b/3/dataset_5b33c8ff-b12b-4307-a35c-92ea8571dc04.dat" ext="gff3" label="D.gff">
                <metadata>
                  <dataset id="b54fb481e575bccc" hid="5"
                      size="2.3 KB"
                      edam_format="format_1975"
                      file_ext="gff3" />
                  <history id="8155e4b4bf1581ff"
                      user_email="test@bx.psu.edu"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="?"
                      data_lines="27"
                      comment_lines="19"
                      columns="9"
                      delimiter="__tc__"
                      attributes="6"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </trackFile>
            </files>

            <options>
                <style>
                    <overridePlugins>False</overridePlugins>
                    <overrideDraggable>False</overrideDraggable>
                    <className>feature</className>
                    <description>note,description</description>
                    <label>product,name,id</label>
                    <height>10px</height>
                    <maxHeight>600</maxHeight>
                </style>
                <scaling>
                        <method>ignore</method>
                        <scheme>
                            <color>__auto__</color>
                        </scheme>
                </scaling>
                <menus>
                </menus>
                <custom_config>
                </custom_config>

                <gff>
                    <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType>
                    <index>false</index>
                </gff>
            </options>
        </track>
        <track cat="Ignore Scale" format="gene_calls" visibility="default_off">
            <files>
              <trackFile path="/tmp/tmpqkd9zdgq/files/2/d/4/dataset_2d49732b-93ef-4018-971f-5a3b92e9ecd0.dat" ext="gff3" label="1.gff">
                <metadata>
                  <dataset id="1ae74d26531588b0" hid="6"
                      size="2.3 KB"
                      edam_format="format_1975"
                      file_ext="gff3" />
                  <history id="8155e4b4bf1581ff"
                      user_email="test@bx.psu.edu"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="?"
                      data_lines="27"
                      comment_lines="19"
                      columns="9"
                      delimiter="__tc__"
                      attributes="6"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </trackFile>
            </files>

            <options>
                <style>
                    <overridePlugins>False</overridePlugins>
                    <overrideDraggable>False</overrideDraggable>
                    <className>feature</className>
                    <description>note,description</description>
                    <label>product,name,id</label>
                    <height>10px</height>
                    <maxHeight>600</maxHeight>
                </style>
                <scaling>
                        <method>ignore</method>
                        <scheme>
                            <color>#ff00ff</color>
                        </scheme>
                </scaling>
                <menus>
                </menus>
                <custom_config>
                </custom_config>

                <gff>
                    <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType>
                    <index>false</index>
                </gff>
            </options>
        </track>
        <track cat="Scaled Colour" format="gene_calls" visibility="default_off">
            <files>
              <trackFile path="/tmp/tmpqkd9zdgq/files/2/d/4/dataset_2d49732b-93ef-4018-971f-5a3b92e9ecd0.dat" ext="gff3" label="1.gff">
                <metadata>
                  <dataset id="1ae74d26531588b0" hid="6"
                      size="2.3 KB"
                      edam_format="format_1975"
                      file_ext="gff3" />
                  <history id="8155e4b4bf1581ff"
                      user_email="test@bx.psu.edu"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="?"
                      data_lines="27"
                      comment_lines="19"
                      columns="9"
                      delimiter="__tc__"
                      attributes="6"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </trackFile>
            </files>

            <options>
                <style>
                    <overridePlugins>False</overridePlugins>
                    <overrideDraggable>False</overrideDraggable>
                    <className>feature</className>
                    <description>note,description</description>
                    <label>product,name,id</label>
                    <height>10px</height>
                    <maxHeight>600</maxHeight>
                </style>
                <scaling>
                        <method>score</method>
                        <algo>linear</algo>
                        <scales>
                            <type>automatic</type>

                        </scales>
                        <scheme>
                            <type>opacity</type>
                            <color>__auto__</color>
                        </scheme>
                </scaling>
                <menus>
                </menus>
                <custom_config>
                </custom_config>

                <gff>
                    <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType>
                    <index>false</index>
                </gff>
            </options>
        </track>
        <track cat="Scaled Colour" format="gene_calls" visibility="default_off">
            <files>
              <trackFile path="/tmp/tmpqkd9zdgq/files/2/d/4/dataset_2d49732b-93ef-4018-971f-5a3b92e9ecd0.dat" ext="gff3" label="1.gff">
                <metadata>
                  <dataset id="1ae74d26531588b0" hid="6"
                      size="2.3 KB"
                      edam_format="format_1975"
                      file_ext="gff3" />
                  <history id="8155e4b4bf1581ff"
                      user_email="test@bx.psu.edu"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="?"
                      data_lines="27"
                      comment_lines="19"
                      columns="9"
                      delimiter="__tc__"
                      attributes="6"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </trackFile>
            </files>

            <options>
                <style>
                    <overridePlugins>False</overridePlugins>
                    <overrideDraggable>False</overrideDraggable>
                    <className>feature</className>
                    <description>note,description</description>
                    <label>product,name,id</label>
                    <height>10px</height>
                    <maxHeight>600</maxHeight>
                </style>
                <scaling>
                        <method>score</method>
                        <algo>linear</algo>
                        <scales>
                            <type>automatic</type>

                        </scales>
                        <scheme>
                            <type>opacity</type>
                            <color>#0000ff</color>
                        </scheme>
                </scaling>
                <menus>
                </menus>
                <custom_config>
                </custom_config>

                <gff>
                    <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType>
                    <index>false</index>
                </gff>
            </options>
        </track>
        <track cat="Scaled Colour" format="gene_calls" visibility="default_off">
            <files>
              <trackFile path="/tmp/tmpqkd9zdgq/files/2/d/4/dataset_2d49732b-93ef-4018-971f-5a3b92e9ecd0.dat" ext="gff3" label="1.gff">
                <metadata>
                  <dataset id="1ae74d26531588b0" hid="6"
                      size="2.3 KB"
                      edam_format="format_1975"
                      file_ext="gff3" />
                  <history id="8155e4b4bf1581ff"
                      user_email="test@bx.psu.edu"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="?"
                      data_lines="27"
                      comment_lines="19"
                      columns="9"
                      delimiter="__tc__"
                      attributes="6"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </trackFile>
            </files>

            <options>
                <style>
                    <overridePlugins>False</overridePlugins>
                    <overrideDraggable>False</overrideDraggable>
                    <className>feature</className>
                    <description>note,description</description>
                    <label>product,name,id</label>
                    <height>10px</height>
                    <maxHeight>600</maxHeight>
                </style>
                <scaling>
                        <method>score</method>
                        <algo>linear</algo>
                        <scales>
                            <type>manual</type>

                            <min>0</min>
                            <max>1000</max>
                        </scales>
                        <scheme>
                            <type>opacity</type>
                            <color>__auto__</color>
                        </scheme>
                </scaling>
                <menus>
                </menus>
                <custom_config>
                </custom_config>

                <gff>
                    <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType>
                    <index>false</index>
                </gff>
            </options>
        </track>
        <track cat="Scaled Colour" format="gene_calls" visibility="default_off">
            <files>
              <trackFile path="/tmp/tmpqkd9zdgq/files/2/d/4/dataset_2d49732b-93ef-4018-971f-5a3b92e9ecd0.dat" ext="gff3" label="1.gff">
                <metadata>
                  <dataset id="1ae74d26531588b0" hid="6"
                      size="2.3 KB"
                      edam_format="format_1975"
                      file_ext="gff3" />
                  <history id="8155e4b4bf1581ff"
                      user_email="test@bx.psu.edu"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="?"
                      data_lines="27"
                      comment_lines="19"
                      columns="9"
                      delimiter="__tc__"
                      attributes="6"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </trackFile>
            </files>

            <options>
                <style>
                    <overridePlugins>False</overridePlugins>
                    <overrideDraggable>False</overrideDraggable>
                    <className>feature</className>
                    <description>note,description</description>
                    <label>product,name,id</label>
                    <height>10px</height>
                    <maxHeight>600</maxHeight>
                </style>
                <scaling>
                        <method>score</method>
                        <algo>linear</algo>
                        <scales>
                            <type>manual</type>

                            <min>0</min>
                            <max>1000</max>
                        </scales>
                        <scheme>
                            <type>opacity</type>
                            <color>#ff0000</color>
                        </scheme>
                </scaling>
                <menus>
                </menus>
                <custom_config>
                </custom_config>

                <gff>
                    <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType>
                    <index>false</index>
                </gff>
            </options>
        </track>
        <track cat="Realistic" format="gene_calls" visibility="default_off">
            <files>
              <trackFile path="/tmp/tmpqkd9zdgq/files/0/3/0/dataset_030f551a-fd97-470e-ab58-328d8108783d.dat" ext="gff3" label="interpro.gff">
                <metadata>
                  <dataset id="440a6c2b5d9efe20" hid="7"
                      size="103.3 KB"
                      edam_format="format_1975"
                      file_ext="gff3" />
                  <history id="8155e4b4bf1581ff"
                      user_email="test@bx.psu.edu"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="?"
                      data_lines="556"
                      comment_lines="2"
                      columns="9"
                      delimiter="__tc__"
                      attributes="11"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </trackFile>
            </files>

            <options>
                <style>
                    <overridePlugins>False</overridePlugins>
                    <overrideDraggable>False</overrideDraggable>
                    <className>feature</className>
                    <description>note,description</description>
                    <label>product,name,id</label>
                    <height>10px</height>
                    <maxHeight>600</maxHeight>
                </style>
                <scaling>
                        <method>ignore</method>
                        <scheme>
                            <color>__auto__</color>
                        </scheme>
                </scaling>
                <menus>
                </menus>
                <custom_config>
                </custom_config>

                <gff>
                    <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType>
                    <index>false</index>
                </gff>
            </options>
        </track>
        <track cat="Realistic" format="gene_calls" visibility="default_off">
            <files>
              <trackFile path="/tmp/tmpqkd9zdgq/files/a/b/b/dataset_abb36b76-2a3a-4353-919e-13c94629303f.dat" ext="gff3" label="2.gff">
                <metadata>
                  <dataset id="ea0b941dfbe636f8" hid="8"
                      size="326 bytes"
                      edam_format="format_1975"
                      file_ext="gff3" />
                  <history id="8155e4b4bf1581ff"
                      user_email="test@bx.psu.edu"
                      user_id="2"
                      display_name="test_history"/>
                  <metadata
                      dbkey="?"
                      data_lines="3"
                      comment_lines="3"
                      columns="9"
                      delimiter="__tc__"
                      attributes="4"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </trackFile>
            </files>

            <options>
                <style>
                    <overridePlugins>False</overridePlugins>
                    <overrideDraggable>False</overrideDraggable>
                    <className>feature</className>
                    <description>note,description</description>
                    <label>product,name,id</label>
                    <height>10px</height>
                    <maxHeight>600</maxHeight>
                </style>
                <scaling>
                        <method>ignore</method>
                        <scheme>
                            <color>__auto__</color>
                        </scheme>
                </scaling>
                <menus>
                </menus>
                <custom_config>
                </custom_config>

                <gff>
                    <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType>
                    <match>cDNA_match</match>
                    <index>false</index>
                </gff>
            </options>
        </track>
    </tracks>
    <plugins
        ComboTrackSelector=""
        Bookmarks=""
        GCContent=""
        BlastView="True"
        theme=""
        />
</root>