Mercurial > repos > iuc > jbrowse
view test-data/bw/test.xml @ 22:5f70e7fe6077 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit a4b0969b33a68a0ea9ba12291f6694aec24f13ed
author | iuc |
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date | Tue, 30 Oct 2018 18:57:53 -0400 |
parents | ff11d442feed |
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<?xml version="1.0"?> <root> <metadata> <gencode>11</gencode> <genomes> <genome>test-data/merlin.fa</genome> </genomes> <general> <defaultLocation></defaultLocation> <trackPadding>40</trackPadding> <shareLink>true</shareLink> <aboutDescription></aboutDescription> <show_tracklist>true</show_tracklist> <show_nav>true</show_nav> <show_overview>false</show_overview> <show_menu>true</show_menu> <hideGenomeOptions>false</hideGenomeOptions> </general> </metadata> <tracks> <track cat="Scaling" format="wiggle"> <files> <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Auto Global"/> </files> <options> <wiggle> <type>JBrowse/View/Track/Wiggle/XYPlot</type> <variance_band>true</variance_band> <autoscale>global</autoscale> <color_pos>__auto__</color_pos> <color_neg>__auto__</color_neg> <bicolor_pivot>zero</bicolor_pivot> <scale>linear</scale> </wiggle> </options> </track> <track cat="Scaling" format="wiggle"> <files> <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Auto Local"/> </files> <options> <wiggle> <type>JBrowse/View/Track/Wiggle/XYPlot</type> <variance_band>true</variance_band> <autoscale>local</autoscale> <color_pos>__auto__</color_pos> <color_neg>__auto__</color_neg> <bicolor_pivot>zero</bicolor_pivot> <scale>linear</scale> </wiggle> </options> </track> <track cat="Scaling" format="wiggle"> <files> <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Manual"/> </files> <options> <wiggle> <type>JBrowse/View/Track/Wiggle/XYPlot</type> <variance_band>false</variance_band> <autoscale>fixed</autoscale> <min>20</min> <max>60</max> <color_pos>__auto__</color_pos> <color_neg>__auto__</color_neg> <bicolor_pivot>zero</bicolor_pivot> <scale>linear</scale> </wiggle> </options> </track> <track cat="Colouring" format="wiggle"> <files> <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Auto A"/> <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Auto B"/> </files> <options> <wiggle> <type>JBrowse/View/Track/Wiggle/XYPlot</type> <variance_band>false</variance_band> <autoscale>local</autoscale> <color_pos>__auto__</color_pos> <color_neg>__auto__</color_neg> <bicolor_pivot>mean</bicolor_pivot> <scale>linear</scale> </wiggle> </options> </track> <track cat="Colouring" format="wiggle"> <files> <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Manual"/> </files> <options> <wiggle> <type>JBrowse/View/Track/Wiggle/XYPlot</type> <variance_band>false</variance_band> <autoscale>local</autoscale> <color_pos>#0000ff</color_pos> <color_neg>#ff0000</color_neg> <bicolor_pivot>mean</bicolor_pivot> <scale>linear</scale> </wiggle> </options> </track> <track cat="Colouring" format="wiggle"> <files> <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Manual - Inverted"/> </files> <options> <wiggle> <type>JBrowse/View/Track/Wiggle/XYPlot</type> <variance_band>false</variance_band> <autoscale>local</autoscale> <color_pos>#ff0000</color_pos> <color_neg>#0000ff</color_neg> <bicolor_pivot>mean</bicolor_pivot> <scale>log</scale> </wiggle> </options> </track> <track cat="Colouring" format="wiggle"> <files> <trackFile path="test-data/bw/data.bw" ext="bigwig" label="Nonstandard Pivot"/> </files> <options> <wiggle> <type>JBrowse/View/Track/Wiggle/XYPlot</type> <variance_band>false</variance_band> <autoscale>local</autoscale> <color_pos>#0000ff</color_pos> <color_neg>#ff0000</color_neg> <bicolor_pivot>100</bicolor_pivot> <scale>linear</scale> </wiggle> </options> </track> </tracks> </root>