Mercurial > repos > iuc > jbrowse
view test-data/all_fasta.loc @ 38:667e17248bfe draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit ae8d2d9583a8e17fc7e4e1bc1e681a8998b4de07"
author | iuc |
---|---|
date | Wed, 12 Feb 2020 03:35:41 -0500 |
parents | 836d1aa3e89a |
children |
line wrap: on
line source
#This file lists the locations and dbkeys of all the fasta files #under the "genome" directory (a directory that contains a directory #for each build). The script extract_fasta.py will generate the file #all_fasta.loc. This file has the format (white space characters are #TAB characters): # #<unique_build_id> <dbkey> <display_name> <file_path> # #So, all_fasta.loc could look something like this: # #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa # #Your all_fasta.loc file should contain an entry for each individual #fasta file. So there will be multiple fasta files for each build, #such as with hg19 above. # merlin merlin Merlin ${__HERE__}/merlin.fa