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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 57eebdcb732acc74769bac72ab6bb3e9afd91f47
author iuc
date Fri, 06 Jul 2018 06:10:18 -0400
parents ff11d442feed
children 1cfc579079a6
line wrap: on
line source

<?xml version="1.0"?>
<root>
    <metadata>
        <gencode>11</gencode>
        <genomes>
                  <genome path="/tmp/tmpfqQZDj/files/000/dataset_2.dat">
                    <metadata>
                      <dataset id="9a22496ee796fbfc" hid="1"
                          size="171.6 KB"
                          edam_format="format_1929"
                          file_ext="fasta" />
                      <history id="fa6d20d0fb68383f"
                          user_email="test@bx.psu.edu"
                          user_id="2"
                          display_name="test_history"/>
                      <metadata
                          dbkey="hg17"
                          data_lines="2881"
                          sequences="1"
                          />
                      <tool
                          tool_id="upload1"
                          tool_version="1.1.4"
                          />
                    </metadata>
                  </genome>
        </genomes>
        <general>
            <defaultLocation></defaultLocation>
            <trackPadding>20</trackPadding>

            <shareLink>true</shareLink>
            <aboutDescription></aboutDescription>
            <show_tracklist>true</show_tracklist>
            <show_nav>true</show_nav>
            <show_overview>true</show_overview>
            <show_menu>true</show_menu>
            <hideGenomeOptions>false</hideGenomeOptions>
        </general>
        <galaxyUrl>http://localhost</galaxyUrl>
    </metadata>
    <tracks>
        <track cat="Aligned reads" format="pileup" visibility="default_off">
            <files>
              <trackFile path="/tmp/tmpfqQZDj/files/000/dataset_1.dat" ext="bam" label="merlin-sample.bam">
                <metadata>
                  <dataset id="2891970512fa2d5a" hid="1"
                      size="12.9 KB"
                      edam_format="format_2572"
                      file_ext="bam" />
                  <history id="2891970512fa2d5a"
                      user_email="planemo@galaxyproject.org"
                      user_id="1"
                      display_name="Unnamed history"/>
                  <metadata
                      dbkey="hg17"
                      bam_index="__lt__galaxy.model.MetadataFile object at 0x7fc42c1d18d0__gt__"
                      bam_version="1.3"
                      sort_order="coordinate"
                      read_groups=""
                      reference_names="[SafeStringWrapper(unicode:__lt__class __sq__galaxy.tools.wrappers.ToolParameterValueWrapper__sq____gt__,__lt__class __sq__galaxy.util.object_wrapper.SafeStringWrapper__sq____gt__,__lt__class __sq__numbers.Number__sq____gt__,__lt__type __sq__NoneType__sq____gt__,__lt__type __sq__NotImplementedType__sq____gt__,__lt__type __sq__bool__sq____gt__,__lt__type __sq__bytearray__sq____gt__,__lt__type __sq__ellipsis__sq____gt__) object at 7fc4484b3170 on: u__sq__Merlin__sq__]"
                      reference_lengths="[172788]"
                      bam_header="{SafeStringWrapper(unicode:__lt__class __sq__galaxy.tools.wrappers.ToolParameterValueWrapper__sq____gt__,__lt__class __sq__galaxy.util.object_wrapper.SafeStringWrapper__sq____gt__,__lt__class __sq__numbers.Number__sq____gt__,__lt__type __sq__NoneType__sq____gt__,__lt__type __sq__NotImplementedType__sq____gt__,__lt__type __sq__bool__sq____gt__,__lt__type __sq__bytearray__sq____gt__,__lt__type __sq__ellipsis__sq____gt__) object at 7fc44857fb90 on: u__sq__SQ__sq__: [{SafeStringWrapper(unicode:__lt__class __sq__galaxy.tools.wrappers.ToolParameterValueWrapper__sq____gt__,__lt__class __sq__galaxy.util.object_wrapper.SafeStringWrapper__sq____gt__,__lt__class __sq__numbers.Number__sq____gt__,__lt__type __sq__NoneType__sq____gt__,__lt__type __sq__NotImplementedType__sq____gt__,__lt__type __sq__bool__sq____gt__,__lt__type __sq__bytearray__sq____gt__,__lt__type __sq__ellipsis__sq____gt__) object at 7fc44857fe90 on: u__sq__LN__sq__: 172788, 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                      columns="12"
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                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.4"
                      />
                </metadata>
              </trackFile>
            </files>

            <options>

                <pileup>
                    <auto_snp>false</auto_snp>
                    <bam_indices>
                        <bam_index>/tmp/tmpfqQZDj/files/_metadata_files/000/metadata_1.dat</bam_index>
                    </bam_indices>
                </pileup>
            </options>
        </track>
    </tracks>
    <plugins
        ComboTrackSelector=""
        Bookmarks=""
        GCContent=""
        theme=""
        />
</root>