Mercurial > repos > iuc > jbrowse
view test-data/gff3/1.gff @ 8:ad4b9d7eae6a draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 9a243c616a4a3156347e38fdb5f35863ae5133f9
| author | iuc |
|---|---|
| date | Tue, 29 Nov 2016 10:55:30 -0500 |
| parents | 7342f467507b |
| children |
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##gff-version 3 ##sequence-region Merlin 1 172788 Merlin GeneMark.hmm gene 10 30 . + . ID=Merlin_1;seqid=Merlin Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_1_mRNA;Parent=Merlin_1 Merlin GeneMark.hmm CDS 14 20 1000 + 0 ID=Merlin_1_CDS ;Parent=Merlin_1_mRNA Merlin GeneMark.hmm CDS 24 30 500 + 0 ID=Merlin_1_CDS ;Parent=Merlin_1_mRNA Merlin GeneMark.hmm gene 14 30 . + . ID=Merlin_2;seqid=Merlin;color=#00ff00 Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_2_mRNA;seqid=Merlin;color=#00ff00;Parent=Merlin_2 Merlin GeneMark.hmm CDS 14 20 500 + 0 ID=Merlin_2_CDS ;Parent=Merlin_2_mRNA;color=#0000ff Merlin GeneMark.hmm CDS 24 30 750 + 0 ID=Merlin_2_CDS ;Parent=Merlin_2_mRNA;color=#00ff00 Merlin GeneMark.hmm gene 10 30 . + . ID=Merlin_3;seqid=Merlin Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_3A_mRNA;Parent=Merlin_3;color=#0000ff Merlin GeneMark.hmm CDS 14 18 1000 + 0 ID=Merlin_3A_CDS ;Parent=Merlin_3A_mRNA;color=#0000ff Merlin GeneMark.hmm CDS 20 30 800 + 0 ID=Merlin_3A_CDS ;Parent=Merlin_3A_mRNA;color=#0000ff Merlin GeneMark.hmm mRNA 14 30 . + . ID=Merlin_3B_mRNA;Parent=Merlin_3;color=#0000ff Merlin GeneMark.hmm CDS 14 22 400 + 0 ID=Merlin_3B_CDS ;Parent=Merlin_3B_mRNA;color=#0000ff Merlin GeneMark.hmm CDS 24 30 1000 + 0 ID=Merlin_3B_CDS ;Parent=Merlin_3B_mRNA;color=#0000ff Merlin exonerate gene 1740 2300 . + . Name=Apple3;Note=Gene with two splicing models;ID=1 Merlin exonerate mRNA 1740 2300 . + . Name=Apple3-a;Note=mRNA A with both CDSs and UTRs;ID=1A;Parent=1; Merlin exonerate UTR 1740 1799 . + . Parent=1A Merlin exonerate CDS 1900 2080 . + 0 Parent=1A Merlin exonerate CDS 2100 2120 . + 2 Parent=1A Merlin exonerate UTR 2120 2300 . + . Parent=1A Merlin exonerate mRNA 1740 2300 . + . Name=Apple3-b;Note=mRNA B with both CDSs and UTRs;ID=1B;Parent=1; Merlin exonerate UTR 1740 1799 . + . Parent=1B Merlin exonerate CDS 1800 1880 . + 0 Parent=1B Merlin exonerate CDS 1900 1950 . + 1 Parent=1B Merlin exonerate CDS 2100 2120 . + 2 Parent=1B Merlin exonerate UTR 2120 2300 . + . Parent=1B # { # "baseUrl": "http://localhost:8000/out/data/" # "compress": 0, # "label": "Transcript", # "storeClass": "JBrowse/Store/SeqFeature/NCList", # "trackType": "JBrowse/View/Track/CanvasFeatures", # "type": "JBrowse/View/Track/CanvasFeatures", # "urlTemplate": "tracks/42ff9cb16c0509f0abb4a76ce14077bc_0/{refseq}/trackData.json", # }