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view test-data/bam/test.xml @ 16:b5c5470d7c09 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit c306d242caf7e0447517c9749ca7656823f315e5
author iuc
date Wed, 13 Sep 2017 13:07:20 -0400
parents 7342f467507b
children ff11d442feed
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<?xml version="1.0"?>
<root>
    <metadata>
        <gencode>11</gencode>
        <genomes>
            <genome>test-data/merlin.fa</genome>
        </genomes>
    </metadata>
    <tracks>
        <track cat="Default" format="pileup">
            <files>
                <trackFile path="test-data/bam/154.bam" ext="bam" label="Basic"/>
            </files>
            <options>
                <pileup>
                    <auto_snp>false</auto_snp>
                    <bam_indices>
                        <bam_index>test-data/bam/154.bam.bai</bam_index>
                    </bam_indices>
                </pileup>
            </options>
        </track>
        <track cat="Default" format="pileup">
            <files>
                <trackFile path="test-data/bam/154.bam" ext="bam" label="Auto-SNP"/>
            </files>
            <options>
                <pileup>
                    <auto_snp>true</auto_snp>
                    <bam_indices>
                        <bam_index>test-data/bam/154.bam.bai</bam_index>
                    </bam_indices>
                </pileup>
            </options>
        </track>
    </tracks>
</root>