# HG changeset patch # User iuc # Date 1540940273 14400 # Node ID 5f70e7fe6077cde04202c0a9bf4b2a9ac78079d8 # Parent 1c718d8b3532c47905bf49410422024a10591b9c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit a4b0969b33a68a0ea9ba12291f6694aec24f13ed diff -r 1c718d8b3532 -r 5f70e7fe6077 jbrowse-fromdir.xml --- a/jbrowse-fromdir.xml Tue Sep 11 07:11:44 2018 -0400 +++ b/jbrowse-fromdir.xml Tue Oct 30 18:57:53 2018 -0400 @@ -1,4 +1,4 @@ - + upgrades the bare data directory to a full JBrowse instance macros.xml diff -r 1c718d8b3532 -r 5f70e7fe6077 jbrowse.py --- a/jbrowse.py Tue Sep 11 07:11:44 2018 -0400 +++ b/jbrowse.py Tue Oct 30 18:57:53 2018 -0400 @@ -31,7 +31,7 @@ }} """ - COLOR_FUNCTION_TEMPLATE_QUAL = """ + COLOR_FUNCTION_TEMPLATE_QUAL = r""" function(feature, variableName, glyphObject, track) {{ var search_up = function self(sf, attr){{ if(sf.get(attr) !== undefined){{ diff -r 1c718d8b3532 -r 5f70e7fe6077 jbrowse.xml --- a/jbrowse.xml Tue Sep 11 07:11:44 2018 -0400 +++ b/jbrowse.xml Tue Oct 30 18:57:53 2018 -0400 @@ -7,7 +7,6 @@ python '${__tool_directory__}/jbrowse.py' --version to test the files I want to test. Hmph. #if str($uglyTestingHack) == "enabled": mv $trackxml $output #end if -]]> + ]]> - - @@ -65,8 +62,7 @@

- ]]> - + ]]> @@ -345,9 +341,9 @@ - + - + @@ -375,10 +371,7 @@ - + @@ -1191,7 +1184,6 @@ scores. Manually specify minimum and maximum score attributes, or do not use varied colours based on scores to avoid this issue. - @ATTRIBUTION@ ]]>