# HG changeset patch # User iuc # Date 1612612873 0 # Node ID 6cd09d7b5f371b2976073d3cc173480450732d95 # Parent 8774b28235bb5112873db5393cc35f8d73e2e421 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 96f42b908d68ef8b1da5507e9216db74e46ebf06" diff -r 8774b28235bb -r 6cd09d7b5f37 jbrowse.xml --- a/jbrowse.xml Thu Dec 31 16:00:42 2020 +0000 +++ b/jbrowse.xml Sat Feb 06 12:01:13 2021 +0000 @@ -683,7 +683,17 @@ - + + + + + + + + + + + @@ -691,7 +701,16 @@ - + + + + + + + + + + @@ -708,7 +727,19 @@ - + + + + + + + + + + + + + @@ -904,7 +935,18 @@ - + + + + + + + + + + + + @@ -967,7 +1009,14 @@ - + + + + + + + + @@ -1005,7 +1054,13 @@ - + + + + + + + @@ -1057,7 +1112,15 @@ - + + + + + + + + + @@ -1076,7 +1139,13 @@ - + + + + + + + @@ -1086,7 +1155,11 @@ - + + + + + @@ -1133,7 +1206,11 @@ - + + + + + - - - 11 - - - - - - - - - - - - - 20 - - true - - true - true - true - true - false - - http://localhost - - - - - - - - - - - - - - - - - - - - false - - /tmp/tmpqkd9zdgq/files/_metadata_files/a/5/2/metadata_a520581b-e8cc-43e5-8514-3379cd5eaafb.dat - - 5000000 - - - - - - diff -r 8774b28235bb -r 6cd09d7b5f37 test-data/bed/test.xml --- a/test-data/bed/test.xml Thu Dec 31 16:00:42 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,136 +0,0 @@ - - - - 11 - - - - - - - - - - - - - 20 - - true - - true - true - true - true - false - - http://localhost - - - - - - - - - - - - - - - - - - - - - - - - - - ignore - - __auto__ - - - - - - - - - NeatHTMLFeatures/View/Track/NeatFeatures - false - - - - - - diff -r 8774b28235bb -r 6cd09d7b5f37 test-data/custom_config/test.xml --- a/test-data/custom_config/test.xml Thu Dec 31 16:00:42 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,118 +0,0 @@ - - - - 11 - - - - - - - - - - - - - 20 - - true - - true - true - true - true - false - - http://localhost - - - - - - - - - - - - - - - - - - ignore - - __auto__ - - - - - - - collapsed - - - 150 - - - 0.1 - - - false - - - - - NeatHTMLFeatures/View/Track/NeatFeatures - false - - - - - - diff -r 8774b28235bb -r 6cd09d7b5f37 test-data/endpoints/test.xml --- a/test-data/endpoints/test.xml Thu Dec 31 16:00:42 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,106 +0,0 @@ - - - - 11 - - - - - - - - - - - - - 20 - - true - - true - true - true - true - false - - http://localhost - - - - - - - - ignore - - __auto__ - - - - - - - - http://example.org.external/rest_api/ - - - - - - - - - ignore - - __auto__ - - - - - - - - http://example.org.external/sparql/ - DEFINE sql:select-option 'order' prefix rdf: __lt__http://www.w3.org/1999/02/22-rdf-syntax-ns#__gt__ select ?start, ?end, IF( ?faldo_type = faldo:ForwardStrandPosition, 1, IF( ?faldo_type = faldo:ReverseStrandPosition, -1, 0 ) ) as ?strand, str(?obj_type_name) as ?type, str(?label) as ?name, str(?obj_name) as ?description, ?obj as ?uniqueID, ?parent as ?parentUniqueID where { values ?faldo_type { faldo:ForwardStrandPosition faldo:ReverseStrandPosition faldo:BothStrandsPosition } } - - - - - - diff -r 8774b28235bb -r 6cd09d7b5f37 test-data/gencode/test-1.xml --- a/test-data/gencode/test-1.xml Thu Dec 31 16:00:42 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,51 +0,0 @@ - - - - 1 - - - - - - - - - - - - - 20 - - true - - true - true - true - true - false - - http://localhost - - - - - diff -r 8774b28235bb -r 6cd09d7b5f37 test-data/gencode/test-data_table.xml --- a/test-data/gencode/test-data_table.xml Thu Dec 31 16:00:42 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,33 +0,0 @@ - - - - 1 - - - - s - - - - 20 - - true - - true - true - true - true - false - - http://localhost - - - - - diff -r 8774b28235bb -r 6cd09d7b5f37 test-data/gencode/test.xml --- a/test-data/gencode/test.xml Thu Dec 31 16:00:42 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,51 +0,0 @@ - - - - 11 - - - - - - - - - - - - - 20 - - true - - true - true - true - true - false - - http://localhost - - - - - diff -r 8774b28235bb -r 6cd09d7b5f37 test-data/gff3/test.xml --- a/test-data/gff3/test.xml Thu Dec 31 16:00:42 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,592 +0,0 @@ - - - - 11 - - - - - - - - - - - - - 20 - - true - - true - true - true - true - false - - http://localhost - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ignore - - __auto__ - - - - - - - - - NeatHTMLFeatures/View/Track/NeatFeatures - false - - - - - - - - - - - - - - - - - - - ignore - - #ff00ff - - - - - - - - - NeatHTMLFeatures/View/Track/NeatFeatures - false - - - - - - - - - - - - - - - - - - - score - linear - - automatic - - - - opacity - __auto__ - - - - - - - - - NeatHTMLFeatures/View/Track/NeatFeatures - false - - - - - - - - - - - - - - - - - - - score - linear - - automatic - - - - opacity - #0000ff - - - - - - - - - NeatHTMLFeatures/View/Track/NeatFeatures - false - - - - - - - - - - - - - - - - - - - score - linear - - manual - - 0 - 1000 - - - opacity - __auto__ - - - - - - - - - NeatHTMLFeatures/View/Track/NeatFeatures - false - - - - - - - - - - - - - - - - - - - score - linear - - manual - - 0 - 1000 - - - opacity - #ff0000 - - - - - - - - - NeatHTMLFeatures/View/Track/NeatFeatures - false - - - - - - - - - - - - - - - - - - - ignore - - __auto__ - - - - - - - - - NeatHTMLFeatures/View/Track/NeatFeatures - false - - - - - - - - - - - - - - - - - - - ignore - - __auto__ - - - - - - - - - NeatHTMLFeatures/View/Track/NeatFeatures - cDNA_match - false - - - - - - diff -r 8774b28235bb -r 6cd09d7b5f37 test-data/menus/test.xml --- a/test-data/menus/test.xml Thu Dec 31 16:00:42 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,175 +0,0 @@ - - - - 11 - - - - - - - - - - - - - 20 - - true - - true - true - true - true - false - - http://localhost - - - - - - - - - - - - - - - - - - ignore - - __auto__ - - - - - iframeDialog - - Frame title - https://example.com/#!/?id={name}&q={type}&z="{end}" - dijitIconNewTask - - - newWindow - - Frame title 2 - https://example.com/#!/?id={name}&q={type}&z="{end}" - dijitIconBookmark - - - - - - - NeatHTMLFeatures/View/Track/NeatFeatures - false - - - - - - - - - - - - - - - - - - - ignore - - __auto__ - - - - - - - - - NeatHTMLFeatures/View/Track/NeatFeatures - true - - - - - - diff -r 8774b28235bb -r 6cd09d7b5f37 test-data/track_config/test.xml --- a/test-data/track_config/test.xml Thu Dec 31 16:00:42 2020 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,109 +0,0 @@ - - - - 11 - - - - - - - - - - - - - 20 - - true - - true - true - true - true - false - - http://localhost - - - - - - - - - - - - - - - - - - ignore - - __auto__ - - - - - - - - - JBrowse/View/Track/CanvasFeatures - transcript - exon - true - false - - - - - -