Mercurial > repos > iuc > jbrowse
changeset 21:1c718d8b3532 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 9cac72c004cc7ef57be997e2fdafb3b1839a300f
| author | iuc |
|---|---|
| date | Tue, 11 Sep 2018 07:11:44 -0400 |
| parents | 558d652cd681 |
| children | 5f70e7fe6077 |
| files | jbrowse.py jbrowse.xml macros.xml |
| diffstat | 3 files changed, 6 insertions(+), 4 deletions(-) [+] |
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--- a/jbrowse.py Thu Aug 30 11:43:59 2018 -0400 +++ b/jbrowse.py Tue Sep 11 07:11:44 2018 -0400 @@ -572,7 +572,9 @@ if 'match' in gffOpts: config['glyph'] = 'JBrowse/View/FeatureGlyph/Segments' - cmd += ['--type', gffOpts['match']] + if bool(gffOpts['match']): + # Can be empty for CanvasFeatures = will take all by default + cmd += ['--type', gffOpts['match']] cmd += ['--clientConfig', json.dumps(clientConfig), ]
--- a/jbrowse.xml Thu Aug 30 11:43:59 2018 -0400 +++ b/jbrowse.xml Tue Sep 11 07:11:44 2018 -0400 @@ -451,8 +451,8 @@ name="name" type="text" value="match" - help="Match_parts have several options for the parent feature type, such as cDNA_match, match, translated_nucleotide_match, etc. Please select the appropriate one here" - optional="False"/> + help="Match_parts have several options for the parent feature type, such as cDNA_match, match, translated_nucleotide_match, etc. Please select the appropriate one here. You can leave empty to try autodetection (only works with CanvasFeatures track type)." + optional="True"/> </when> <when value="false" /> </conditional>
--- a/macros.xml Thu Aug 30 11:43:59 2018 -0400 +++ b/macros.xml Tue Sep 11 07:11:44 2018 -0400 @@ -13,7 +13,7 @@ </requirements> </xml> <token name="@DATA_DIR@">\$GALAXY_JBROWSE_SHARED_DIR</token> - <token name="@WRAPPER_VERSION@">galaxy0</token> + <token name="@WRAPPER_VERSION@">galaxy1</token> <xml name="stdio"> <stdio> <exit_code range="1:"/>