Mercurial > repos > iuc > jbrowse
changeset 30:ca2def38369c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 74554507efb46fb40ce6e12f0b73425e52ec0977
| author | iuc |
|---|---|
| date | Thu, 11 Apr 2019 09:35:00 -0400 |
| parents | 112eb40ba6cf |
| children | 2bb2e07a7a21 |
| files | jbrowse.xml macros.xml readme.rst test-data/gff3/test.xml |
| diffstat | 4 files changed, 19 insertions(+), 14 deletions(-) [+] |
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--- a/jbrowse.xml Fri Apr 05 07:53:24 2019 -0400 +++ b/jbrowse.xml Thu Apr 11 09:35:00 2019 -0400 @@ -130,7 +130,7 @@ display_name="${dataset.history.get_display_name()}"/> <metadata #for (key, value) in $dataset.get_metadata().items(): - #if "_types" not in $key and $value is not None and len(str($value)) < 20000: + #if "_types" not in $key and $value is not None and len(str($value)) < 5000: ${key}="${value}" #end if #end for @@ -482,7 +482,7 @@ </when> </conditional> <expand macro="track_styling" - classname="feature2" + classname="feature" label="product,name,id" description="note,description" height="10px"/>
--- a/macros.xml Fri Apr 05 07:53:24 2019 -0400 +++ b/macros.xml Thu Apr 11 09:35:00 2019 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <macros> - <token name="@TOOL_VERSION@">1.16.2</token> + <token name="@TOOL_VERSION@">1.16.4</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">jbrowse</requirement> @@ -415,8 +415,7 @@ <param label="Top level features" name="topLevelFeatures" type="text" - value="mRNA" - help="Select which top level features should be displayed. If empty, will try to display all features. If your input files represents gene→mRNA→exon/CDS/UTR, you should use mRNA otherwise exons will not be rendered." + help="Select which top level features should be displayed. If empty, will try to display all features. If your input files represents gene→mRNA→exon/CDS/UTR, you should use mRNA if exons don't render." optional="True"/> </section> </xml>
--- a/readme.rst Fri Apr 05 07:53:24 2019 -0400 +++ b/readme.rst Thu Apr 11 09:35:00 2019 -0400 @@ -25,6 +25,12 @@ History ======= +- 1.16.4+galaxy0 + + - UPDATED to JBrowse 1.16.4 + - ADDED filter too big metadata + - CHANGED default value for topLevelFeatures (gene subfeatures are now inferred) and style.className (feature style was fixed) + - 1.16.2+galaxy0 - UPDATED to JBrowse 1.16.2
--- a/test-data/gff3/test.xml Fri Apr 05 07:53:24 2019 -0400 +++ b/test-data/gff3/test.xml Thu Apr 11 09:35:00 2019 -0400 @@ -144,7 +144,7 @@ <style> <overridePlugins>False</overridePlugins> <overrideDraggable>False</overrideDraggable> - <className>feature2</className> + <className>feature</className> <description>note,description</description> <label>product,name,id</label> <height>10px</height> @@ -198,7 +198,7 @@ <style> <overridePlugins>False</overridePlugins> <overrideDraggable>False</overrideDraggable> - <className>feature2</className> + <className>feature</className> <description>note,description</description> <label>product,name,id</label> <height>10px</height> @@ -252,7 +252,7 @@ <style> <overridePlugins>False</overridePlugins> <overrideDraggable>False</overrideDraggable> - <className>feature2</className> + <className>feature</className> <description>note,description</description> <label>product,name,id</label> <height>10px</height> @@ -312,7 +312,7 @@ <style> <overridePlugins>False</overridePlugins> <overrideDraggable>False</overrideDraggable> - <className>feature2</className> + <className>feature</className> <description>note,description</description> <label>product,name,id</label> <height>10px</height> @@ -372,7 +372,7 @@ <style> <overridePlugins>False</overridePlugins> <overrideDraggable>False</overrideDraggable> - <className>feature2</className> + <className>feature</className> <description>note,description</description> <label>product,name,id</label> <height>10px</height> @@ -434,7 +434,7 @@ <style> <overridePlugins>False</overridePlugins> <overrideDraggable>False</overrideDraggable> - <className>feature2</className> + <className>feature</className> <description>note,description</description> <label>product,name,id</label> <height>10px</height> @@ -496,7 +496,7 @@ <style> <overridePlugins>False</overridePlugins> <overrideDraggable>False</overrideDraggable> - <className>feature2</className> + <className>feature</className> <description>note,description</description> <label>product,name,id</label> <height>10px</height> @@ -550,7 +550,7 @@ <style> <overridePlugins>False</overridePlugins> <overrideDraggable>False</overrideDraggable> - <className>feature2</className> + <className>feature</className> <description>note,description</description> <label>product,name,id</label> <height>10px</height> @@ -581,4 +581,4 @@ BlastView="True" theme="" /> -</root> \ No newline at end of file +</root>