# HG changeset patch
# User iuc
# Date 1613039524 0
# Node ID 70efe7b19018f4a75854be183905f42012155134
# Parent  364b8ee3a3e41a84fd33ddc1459993c8f254bb1f
"planemo upload for repository https://github.com/galaxyproject/iuc/tree/master/tools/jvarkit commit dd0745115487da9c9e9f51c7049619263a055b8e"

diff -r 364b8ee3a3e4 -r 70efe7b19018 tool-data/all_fasta.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/all_fasta.loc.sample	Thu Feb 11 10:32:04 2021 +0000
@@ -0,0 +1,20 @@
+#This file lists the locations and dbkeys of all the fasta files
+#under the "genome" directory (a directory that contains a directory
+#for each build). The script extract_fasta.py will generate the file
+#all_fasta.loc. This file has the format (white space characters are
+#TAB characters):
+#
+#<unique_build_id>	<dbkey>	<display_name>	<file_path>
+#
+#So, all_fasta.loc could look something like this:
+#
+#apiMel3	apiMel3	Honeybee (Apis mellifera): apiMel3	/path/to/genome/apiMel3/apiMel3.fa
+#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/path/to/genome/hg19/hg19canon.fa
+#hg19full	hg19	Human (Homo sapiens): hg19 Full	/path/to/genome/hg19/hg19full.fa
+#sars-cov-2	SARS-CoV-2	SARS-CoV-2 (MN908947.3)	/depot/data/MN908947_3_Wuhan-Hu-1.fasta
+#
+#Your all_fasta.loc file should contain an entry for each individual
+#fasta file. So there will be multiple fasta files for each build,
+#such as with hg19 above.
+#
+#
\ No newline at end of file
diff -r 364b8ee3a3e4 -r 70efe7b19018 tool-data/fasta_indexes.loc.sample
--- a/tool-data/fasta_indexes.loc.sample	Thu Feb 11 10:14:31 2021 +0000
+++ b/tool-data/fasta_indexes.loc.sample	Thu Feb 11 10:32:04 2021 +0000
@@ -26,4 +26,6 @@
 #hg18canon	hg18	Human (Homo sapiens): hg18 Canonical	/depot/data2/galaxy/hg18/sam/hg18canon.fa
 #hg18full	hg18	Human (Homo sapiens): hg18 Full	/depot/data2/galaxy/hg18/sam/hg18full.fa
 #hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/depot/data2/galaxy/hg19/sam/hg19canon.fa
-#hg19full	hg19	Human (Homo sapiens): hg19 Full	/depot/data2/galaxy/hg19/sam/hg19full.fa
\ No newline at end of file
+#hg19full	hg19	Human (Homo sapiens): hg19 Full	/depot/data2/galaxy/hg19/sam/hg19full.fa
+#sars-cov-2	SARS-CoV-2	SARS-CoV-2 (MN908947.3)	/depot/data/MN908947_3_Wuhan-Hu-1.fasta
+