Mercurial > repos > iuc > kallisto_pseudo

diff macros.xml @ 2:1c75aa5de15e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/kallisto/ commit 011de86c970114d5ae22f76e9ee8e2d86c190063
author iuc
date Sat, 09 Dec 2017 05:34:01 -0500
parents 2953303df011
children 5ae5c312d718
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--- a/macros.xml	Tue Sep 05 03:25:54 2017 -0400
+++ b/macros.xml	Sat Dec 09 05:34:01 2017 -0500
@@ -12,4 +12,23 @@
             <citation type="doi">doi:10.1038/nbt.3519</citation>
         </citations>
     </xml>
+    <xml name="reference_input">
+        <conditional name="reference_transcriptome">
+            <param name="reference_transcriptome_source" type="select" label="Reference transcriptome for quantification">
+                <option value="indexed" selected="true">Use a built-in transcriptome</option>
+                <option value="history">Use a transcriptome from history</option>
+            </param>
+            <when value="indexed">
+                <param name="index" type="select" label="Select a reference transcriptome" help="If your transcriptome of interest is not listed, contact your Galaxy administrator">
+                    <options from_data_table="kallisto_indexes">
+                        <filter type="sort_by" column="2" />
+                        <validator type="no_options" message="No transcriptomes are available for the selected input dataset" />
+                    </options>
+                </param>
+            </when>
+            <when value="history">
+                <param name="reference" type="data" format="fasta" label="FASTA reference transcriptome" />
+            </when>
+        </conditional>
+    </xml>
 </macros>
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