Mercurial > repos > iuc > kallisto_quant

diff kallisto_quant.xml @ 6:60f888039fb2 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/kallisto/ commit f84c314bc721b5b0c7be10eaf287b1830caca241"
author iuc
date Thu, 26 Sep 2019 09:12:20 -0400
parents 10c98fab6c5a
children c971db6f0fe5
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line diff
--- a/kallisto_quant.xml	Fri Nov 30 06:26:27 2018 -0500
+++ b/kallisto_quant.xml	Thu Sep 26 09:12:20 2019 -0400
@@ -40,7 +40,7 @@
                 $reads
             #end if
             #if $pseudobam:
-                | samtools sort -O bam -@ \${GALAXY_SLOTS:-1} -o '$pseudobam_output' -
+                | samtools sort -O bam -@ \${GALAXY_SLOTS:-1} -T "\${TMPDIR:-.}" -o '$pseudobam_output' -
             #end if
             && cat run_info.json
         ]]>