Mercurial > repos > iuc > kc_align

comparison kc-align.xml @ 7:8dc7708c3266 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/kc-align commit 3acc1d1d3f8a331b67dc144febacdfe2dacbdea3"
author iuc
date Thu, 14 May 2020 11:44:15 -0400
parents 13a99f96d6cc
children 1c65ddbaeefa
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6:13a99f96d6cc 7:8dc7708c3266
1 <tool id="kc-align" name="Kc-Align" version="0.1.7" python_template_version="3.5"> 1 <tool id="kc-align" name="Kc-Align" version="0.2" python_template_version="3.5">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="0.5.16">kcalign</requirement> 3 <requirement type="package" version="0.6.1">kcalign</requirement>
4 </requirements> 4 </requirements>
5 <command detect_errors="exit_code"> 5 <command detect_errors="exit_code">
6 <![CDATA[ 6 <![CDATA[
7 kc-align 7 kc-align
8 --mode $position.mode 8 --mode $position.mode
11 #if $position.mode == "genome": 11 #if $position.mode == "genome":
12 --start $position.start 12 --start $position.start
13 --end $position.end 13 --end $position.end
14 #end if 14 #end if
15 $compress 15 $compress
16 --parallel
16 ]]></command> 17 ]]></command>
17 <inputs> 18 <inputs>
18 <param name="reference" type="data" format="fasta" label="Reference Sequence" help="Single FASTA reference sequence to be aligned" /> 19 <param name="reference" type="data" format="fasta" label="Reference Sequence" help="Single FASTA reference sequence to be aligned" />
19 <param name="reads" type="data" format="fasta" label="Reads" help="Multi-FASTA of seqeunces to be aligned with the reference" /> 20 <param name="reads" type="data" format="fasta" label="Reads" help="Multi-FASTA of seqeunces to be aligned with the reference" />
20 <conditional name="position" > 21 <conditional name="position" >