Mercurial > repos > iuc > kc_align

diff kc-align.xml @ 9:0c0288a9d92c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/kc-align commit f3a0fbdcf97b2a8ef4b5cc9a8d4d59b7aab4db27"
author iuc
date Mon, 12 Oct 2020 18:09:09 +0000
parents 1c65ddbaeefa
children 97476dfde728
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line diff
--- a/kc-align.xml	Mon Oct 05 20:09:54 2020 +0000
+++ b/kc-align.xml	Mon Oct 12 18:09:09 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="kc-align" name="Kc-Align" version="1.0" python_template_version="3.5">
+<tool id="kc-align" name="Kc-Align" version="1.0.2" python_template_version="3.5">
     <requirements>
         <requirement type="package" version="1.0.2">kcalign</requirement>
     </requirements>
@@ -17,7 +17,7 @@
                 -d '$position.dist'
             #end if
             $compress
-            -th '$threads'
+            -th \${GALAXY_SLOTS:-1}
 
     ]]></command>
     <inputs>
@@ -51,7 +51,6 @@
             </when>
         </conditional>
         <param name="compress" type="boolean" truevalue="--compress" falsevalue="" label="Compress" help="Compress identical sequences" />
-        <param name="threads" type="integer" argument="-th" value="1" label="Cores" />
     </inputs>
     <outputs>
         <data name="fasta" format="fasta" from_work_dir="codon_align.fasta" label="${tool.name}: fasta output" />
@@ -64,7 +63,6 @@
         <param name="mode" value="genome" />
         <param name="start" value="21563" />
         <param name="end" value="25384" />
-        <param name="threads" value="15" />
         <output name="fasta" ftype="fasta" compare="contains" value="kc-align.fasta" />
         <output name="clustal" ftype="txt" compare="contains" value="kc-align.clustal" />
     </test>